Paramixta manurensis: PMPD1_4386
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Entry
PMPD1_4386 CDS
T10259
Name
(GenBank) IncF plasmid conjugative transfer DNA-nicking and unwinding protein TraI
Organism
pmak Paramixta manurensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TrwC
TraI_C
AAA_30
TraI_2B
TraI_hel_assoc_N
AAA_19
ssDNA_TraI_N
DUF7146
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QKJ89284
UniProt:
A0A6M8UI42
LinkDB
All DBs
Position
pPD-1:complement(26444..32110)
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AA seq
1888 aa
AA seq
DB search
MMTVAPVASASDAAGYYSSKDNYYFLDDLESQWLGEGARELGLEGPVDLDTFTNVLHGRL
PDGTELGKDVQGSHVHRPGHDFTFSAPKSISLLILAGGDKRLLEAHHEAVKETLSVIEQM
VTARDTKDGVTSIVPTGKMVAALFTHDTSRNLDPMIHTHAVLANVTELEGKWKALATDYI
HGAGFIETMYRHQVSFGKIYRNSLKSKTEALGYETELTGGRHELWEIKGFTEEVLDEFSS
RHREIIGQVGEEASLKSRDVAALDTRQRKQDISRLRDSDEPVVSSPEKTVSAPSGSPRLP
ESREPREPVPASPALPETEHRQTDASHNEKTPENGEPGGALQEQLPGSPAVPEQEQPIVK
PETTDGRSRLQARWQRQMEGTGFDIDGVMQAARAREATRIISGDESPSPADIIDTVREAI
SVLSDSRTRFTYGDLLMTAHHAGSEQHTIPALRRAIDQAISENLLVPLDGDKGVFTSGIH
LLDELSVQALAADIVKENRVIRFRSPADAAPAHLKSAEHEPIAILNAPASVQRLRETTEE
LVTMSRKAGREVRVLASSVERAMSLEKSKILKGNILQRSRVLDSTFSLSPQSTLIIEGAE
KLGLKEMLVLTGEAREKNAQLLFLDSAGRQSNANALSVLSTSGVPRHGLTEPSAGLEARV
ISITDKRDRYHALAERFAELSSPDNPVTAAVVGAREQQQLTGIIRDALQNAGKLDREGVV
IEARTPVFITAKERKLASSYRPGMVLEDRSEKNETRHYIVDRVHDDTRMLSLIDSDGVLS
RVKLSALNGDWRAFTQEKLSVAPGERLFAVAGDKQAGLRARDRLTVTAVENGELTLTREG
QKHPLTVRADRPLYVTHGYVSAPGARDNEQGTVLASLNGRDLSSNMMNALAQSGSQAEIF
TGEALHRAEDKLARMRTGRSPLALVQQASGKDDAGEALNTLNAALLTDTQKAVTRSIAQM
RDVSFSEAKLLDIAGGFISNVGALRLEVARQVKEGDLIPVRVKGEPRFVARATWEMEKEI
VAAITDGKNTQTPLMANIAPALLDGLTQGQKVATSLILQSTDRFTAVQGYAGTGKTTQFR
AVQAAIDTLPEGDRPVIIGLAPTHRAVKEMRDNGIEAQTLKSFVTDWQQRTAAGETVRYD
RTLFLIDESSMIGNQDTAAAYRAITAGDGRAVPVGDVAQLESPESGAPFQLMQERSPIDV
AVMKEIVRQRDANLKSAVYSVIENKAGAALEKISSVSPLTVPRRPGTVAPAKSVAETKDP
VSFIVADYMSRTDAAREQTMILVQLNADRRAVNSGIHRAMVESRELGQKAVIIPVLERIT
GGRHDFNRIQDWKPGQVVQANDRYLSVTGIDKGGDRVLLRDEAGRIHYYSPQELNATEIE
VFDRREIELREGDQVRMTKTQKLAGHAAHEQYRVEQLRDNGEIVLKNRDGSKTIDPLTVT
ADRHVDYAWAVTGYGGQGASANYDIVLEGTEGARKRMSGMRAFYINASRARDHVQVVTDG
VNDWMDTLKERDKGPVTAHDAIHPEPERAQARQIWAMGQPLARTAIGRTFLREQGLGNSA
VPARVIPPTRKFPDAHLALPVYDGNGKTAGLAMLPLQPETGRIRAGEVRHMMTPGGQAAV
LQKSRSGETVIVSDMAQALDAARANPDAGVLLLTGARTPSAQLLKVAGGLPDKSRRPDAT
LLHLVQTELQAFLRILPPDVPEQENKSALIAAREVANKLGTESPVTLPDSSDKERSVLSD
RMAARIAEAMKEKVPSLPGENVPDYTALVRLASHALAKNAGLPDDAVLHSVVSALSANPL
PAGVRLPAEIPAGSDVPVSVLRQIQEEQRAERLSSKAQQQDLSEQGLASAARALERQGVP
RLPEASRGREPERDMPLPDRVRDIQKER
NT seq
5667 nt
NT seq
+upstream
nt +downstream
nt
atgatgactgttgctcccgtggcgtccgcctcagacgctgccggttattacagcagtaag
gacaactattattttctcgacgatctggaaagccagtggctcggcgagggcgcgcgtgaa
ctgggtctggaaggtccggttgacctggatacgttcactaacgttcttcacggcaggctg
cctgacggcactgagctgggtaaagacgttcagggtagtcacgtacaccgtccggggcac
gactttaccttctccgcacctaaaagcatttcactgcttatcctggccggcggcgataaa
cgtctgctggaggcgcaccatgaagcggtaaaagaaacactgtcagttatcgaacaaatg
gtcaccgcacgggatacgaaagatggcgtcaccagtattgtgccgacaggaaaaatggtg
gcggcgcttttcactcacgatacgtcacgtaatctcgatcccatgatccatacccacgcc
gtgctggcgaacgtaactgaactggaggggaagtggaaggcactggctaccgactatatc
cacggggccgggtttatcgaaaccatgtatcgccaccaggtttcgttcggaaaaatctat
cgtaactcgcttaagagtaaaaccgaggcgctgggttacgagaccgaactcaccggcggc
aggcatgagctgtgggagatcaaaggtttcacagaagaagtgcttgatgagttttcatcg
cgccaccgggaaattatcggacaggtcggcgaagaggcctcgctgaaaagccgtgacgtg
gccgccctcgatacgcgccagcgtaaacaggatatcagccgtctcagagactccgatgaa
ccggtggtttcttcacctgagaagacggtgtcagcgccttccggttcaccacgacttccg
gaaagccgggagccgcgtgagcctgtccccgcgtctccggcactgccggaaacggagcac
cggcagaccgatgccagtcataatgaaaagacgcctgaaaacggtgagccgggcggggcg
ttacaggaacaattacccggctccccggcggtgccggagcaggagcagccgattgttaaa
cctgaaacgacggacggtcgctcgcgccttcaggcgcgctggcaacggcagatggaagga
accggttttgatattgacggggtgatgcaggcggcgcgggcacgcgaagccacgcgcatt
atctccggggacgagtctccctcgccggcggacatcattgacacggtccgtgaagcgatt
tccgttctgagcgacagccgcacgcgttttacgtacggtgatttactgatgacggcacac
catgccggcagtgagcagcataccattccggcgttgcggcgcgcgattgaccaggccatc
agtgagaacctgcttgtgcctctcgacggtgataaaggcgtattcacgtcgggcattcat
ttacttgacgagctttcggttcaggcgctggccgcagatatcgttaaggaaaaccgggtt
atccggttccgttcgcccgcagacgcggcgccggcacatcttaaatcggcagagcacgaa
ccgattgccatcctgaacgcgccggcatccgtccagcgcctgcgtgaaacgacggaggaa
ctggtgacaatgtcacgcaaggcggggcgggaagtcagggtgctggccagttcagtagag
cgcgcgatgagccttgagaaatcgaaaatactgaagggcaatattcttcagcgcagccgc
gtgctggacagcacgttcagcctgtctccccagagtacgctcatcattgaaggcgcggaa
aagctggggttgaaagagatgctcgtcctgaccggtgaggcacgggaaaagaatgcgcag
ctcttgttcctggacagcgccgggcggcagtctaatgcgaacgccctttccgttctgtcg
acgtcaggcgtgccgcgtcatggtctgacggaaccctcagcagggcttgaggccagagtt
atcagtattacggacaaacgcgatcgctatcatgccctggcggaacggtttgccgaactg
agcagccctgataacccggtcactgccgctgttgtgggggcccgcgagcagcaacagctg
accggcatcattcgcgacgcgctgcagaacgccggaaagcttgacagggagggggttgtc
atcgaggcgcgcacgccggtattcattacggcaaaggaacgcaaacttgcgtcctcttac
cgcccggggatggtgctggaagaccgttcggagaaaaatgaaacccgccattatattgtt
gaccgtgtccatgacgacacacgcatgctgtcgctcatagacagcgacggtgtgctttcc
cgcgtaaagctgagcgcactaaacggggactggcgcgcgtttacgcaggaaaagcttagc
gtggcgccgggtgagcggctgtttgcggtggcgggggataagcaggcaggcctccgggcc
cgcgatcgcctgacggtgacggcggtcgaaaacggtgagctgaccctgacacgtgaagga
cagaagcaccccctgacggtccgcgccgatcgcccgctgtacgtgacacacgggtacgtc
agcgccccaggcgcccgtgataatgagcaggggaccgtactggccagcctgaatggccgt
gacctgtcctctaacatgatgaacgcgctggcacagtcaggcagccaggctgagatcttt
accggtgaagccctgcaccgggccgaagataaactcgcccggatgcgaacggggcgttca
ccgcttgccctggtacagcaggccagcggtaaagacgacgccggagaagcactgaacacg
cttaacgcagcactgctgacggacacacagaaagccgtcacacgaagcattgcgcagatg
cgggacgtatctttctcagaggcgaagctgctggatattgcaggtggcttcatcagtaat
gtcggcgccctgcgcctggaggtggcccgtcaggtgaaagagggcgacctgatcccggtc
agggtgaagggcgagccacgatttgtcgcccgcgccacctgggagatggagaaagaaatt
gttgcggccatcacggacggaaaaaacacgcagacgccgctgatggcgaatatcgcgccg
gctctgctggacggcctgacgcagggacagaaggtggccacctcactgatcctgcaaagc
accgaccgttttacggcggttcaggggtatgcgggaaccggtaaaaccacgcagttccgc
gccgttcaggcggctatcgacacgttaccggagggagacaggccggtcattatcggtctt
gcccccacgcaccgggcggtaaaggagatgcgcgataacggcatcgaggcgcaaacgctg
aaatctttcgtgacggactggcagcagcgcaccgcagccggcgaaacggtgcgctatgac
aggaccctgtttctaatcgatgaatcctccatgatcggtaaccaggataccgccgcggcc
taccgggccatcacggcaggcgacgggcgagccgtgccggttggcgacgtcgcgcagctg
gagtcacctgaaagcggcgcgcccttccagctgatgcaggagcgcagcccgatcgatgtg
gccgtgatgaaggaaattgttcgtcagcgcgatgcaaacctgaaatcagcggtctacagc
gtgattgagaacaaggcgggcgccgcgctggaaaaaatcagcagcgtttcaccgctgacc
gttccccgcaggccggggacggttgcgccggcgaaatcggtggctgaaacgaaagatccg
gtcagctttattgtggcggattatatgagccggacggatgcggcccgggaacagaccatg
atactggtccaacttaacgcggaccgccgggctgtcaacagtggcatccatcgggcgatg
gtggaaagccgggaactgggccaaaaggcggtaatcattcccgtacttgagcgcatcacc
ggcgggcgccacgactttaaccgcattcaggactggaaacccggtcaggttgtccaggcg
aacgatcgctatctcagcgttaccggcatcgataaggggggagacagggtactgctgcgg
gatgaggcgggacggatacattactactcgccgcaggagctgaatgccaccgaaatcgag
gtgtttgaccgccgggagatagagctccgcgaaggcgaccaggtgcggatgaccaaaacg
cagaagctggccggacacgcagcccacgagcagtaccgtgtcgagcaactgcgcgacaac
ggcgaaatcgtgctgaaaaaccgggacggaagcaaaacgatcgatccgctcaccgtgacc
gccgaccgccacgtcgattatgcctgggcggtgaccggatacggcggtcagggcgccagc
gcaaactacgacatcgtcctggaaggcacggaaggcgcgcgtaaacgcatgagtggtatg
cgggccttttatatcaacgcctcgcgcgcccgggaccatgttcaggtcgtcaccgatggc
gtgaatgactggatggatacgctgaaagagcgggataaggggcccgtcactgcccacgat
gccattcaccctgaacccgagagagcgcaggcccggcaaatatgggcaatgggacagccg
ctggccagaacggcgattggccggacgtttttgcgtgaacagggactcgggaacagtgct
gtacctgcccgggttatccctccgacgagaaagtttcctgacgctcacctggcgctgccg
gtgtatgacggaaacggtaaaacggcggggctggccatgctgccgctgcagccggaaacc
ggcaggataagagccggtgaggtcaggcatatgatgacgccgggcgggcaggcggctgtt
ttgcagaaaagccgcagcggcgaaacggtgattgtcagcgatatggctcaggcccttgac
gccgcgcgcgcgaacccggacgccggcgtcctgctgctgacgggggcccgaacgccttca
gcgcagttgcttaaggtcgcgggcggtctgccggacaagagccggcgaccggatgccacg
ctgcttcatctggttcagaccgagctgcaggcgtttttacgtatcctgcccccggatgtg
ccggaacaggagaataaatccgcgctcattgccgcacgggaggtggcgaacaaactcggt
acagagtcgcctgtaacactgccggactcgtcggacaaggaacggtcggtgctttctgac
cggatggcggcgcgcattgctgaggccatgaaggagaaggtgccttcgctccccggagag
aacgtcccggactatactgccctggtgcgtctcgcctcccatgccctggcgaaaaatgcc
ggcctgcctgacgatgccgttctgcattcggtggtcagtgcgctgtcggcgaacccgcta
ccggctggcgtacgtctgcctgctgagataccggccggttctgatgttccggtatccgtg
ctgaggcagattcaggaagaacagcgtgctgaaaggctttcatcaaaagcacagcagcag
gatctctcagagcaggggctggccagcgccgcgcgggcgcttgagcggcagggcgtaccc
cggttgccggaagcgtcccgcggacgtgagccggagcgggatatgccgctgccggacagg
gtcagagacattcagaaagaacgttaa
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