Plasmodium malariae: PMUG01_04022400
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Entry
PMUG01_04022400 CDS
T09444
Symbol
UAP56
Name
(RefSeq) ATP-dependent RNA helicase UAP56, putative
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pmal
Plasmodium malariae
Pathway
pmal03013
Nucleocytoplasmic transport
pmal03015
mRNA surveillance pathway
pmal03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmal00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PMUG01_04022400 (UAP56)
09122 Translation
03013 Nucleocytoplasmic transport
PMUG01_04022400 (UAP56)
03015 mRNA surveillance pathway
PMUG01_04022400 (UAP56)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmal03019
]
PMUG01_04022400 (UAP56)
03041 Spliceosome [BR:
pmal03041
]
PMUG01_04022400 (UAP56)
Enzymes [BR:
pmal01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMUG01_04022400 (UAP56)
Messenger RNA biogenesis [BR:
pmal03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PMUG01_04022400 (UAP56)
Spliceosome [BR:
pmal03041
]
Complex C
Other components
EJC/TREX
PMUG01_04022400 (UAP56)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PMUG01_04022400 (UAP56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
39867053
NCBI-ProteinID:
XP_028859678
UniProt:
A0A1A8VSY3
LinkDB
All DBs
Position
4:654047..655892
Genome browser
AA seq
475 aa
AA seq
DB search
MATIDHSVQDELVDYEDDENILDTKDVKGNLENNILNNNNKGVNENGAMRGSYATVHTGG
FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSVLQQ
LDTNDNKDLKEEKELNNNSNVSGTMNNSNANNSNNVSKNKYVRCLGLAHTRELAYQIKNE
FDRFSKYLKNVRCEVVYGGIAMAKHISLFKEDNIPHIIIGTPGRILALIREKYLVTDKIQ
HFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFI
DDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSITRAITLDKLLTECN
FPSIAIHGGLEQEERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSY
LHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgattgatcatagtgttcaagatgaattagtcgactatgaagatgatgaaaat
atattagatactaaagacgtaaaaggaaatttagaaaataatatattaaataataataat
aaaggagttaatgaaaatggtgctatgagaggaagttatgctactgttcatacaggaggg
tttaaagattttttcttaaaaccagaattactaagagcaattagcgaaagtggttttgag
catccctcggaggtacaacaggaaaccatcccggctgcaataacaggaacggatatattg
tgtcaggcaaaaagtgggatgggtaaaacggctgttttcgttttgtctgttttacagcaa
ctggatacgaacgataacaaagatttaaaagaggagaaggaattaaataataacagtaat
gttagtggaaccatgaataatagtaatgctaataatagtaataacgtttcaaaaaataaa
tatgttagatgtcttggtttagcacatacacgtgaattagcatatcaaataaaaaatgag
tttgatcgatttagcaaatatttaaaaaatgtacgttgtgaagtagtatatggtggtata
gcaatggctaagcatatttcattatttaaagaagataatataccacatataataattggt
acacctggacgtattttagcattaataagagaaaaatatttagtaacagataaaatacag
cattttgttctagatgaatgtgataaatgtttagaaaaattagatatgagaagtgatgtt
cagaaaatttttatttctactcctttgaagaaacaagttatgtttttctcagcaactatg
gcaaaagaaatgagagatgtgtgcaaaaaatttttacagaatcctgtggaaatatttatt
gatgatgaagcaaaattaaaattacatggtctattacaacattatgttaaattacaagaa
aaagataaaacaagaaaactaatcgaaattttggatgctctcgaatttaatcaagttatt
atatttgtaaaatctattacaagagctattacactagataaattattgacagagtgtaac
ttcccatcaatagctatacatggtggtttagaacaagaagaaagaattgaaagatacgat
aaatttaaaaaatttgaaaacagaatattagtttctacagatttatttggtagaggaata
gatatagaaagagttaacattgtcattaattatgatatgcctgaaaactcagattcgtat
ttacatagggtcggaagagcaggacgattcggcaccaaaggattggcagttacttttgtt
tcatctcaggaagatactttagcattaaatgaagttcaaacaagatttgaggtagctatt
tcggaaatgccaaataaaattgattgtaatgagtacattaaccagtaa
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