Plasmodium malariae: PMUG01_09015300
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Entry
PMUG01_09015300 CDS
T09444
Symbol
RTCB
Name
(RefSeq) tRNA-splicing ligase RtcB, putative
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pmal
Plasmodium malariae
Brite
KEGG Orthology (KO) [BR:
pmal00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pmal03016
]
PMUG01_09015300 (RTCB)
Enzymes [BR:
pmal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PMUG01_09015300 (RTCB)
Transfer RNA biogenesis [BR:
pmal03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PMUG01_09015300 (RTCB)
Prokaryotic type
tRNA splicing ligases
PMUG01_09015300 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
ATLF
DUF7019
Motif
Other DBs
NCBI-GeneID:
39868681
NCBI-ProteinID:
XP_028861482
UniProt:
A0A1D3PC73
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All DBs
Position
9:296997..298517
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AA seq
506 aa
AA seq
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MERKWNNDVFGFIEKAKETNLYKVNKGLVPDMNVIGHMYLNDRLKLLIDDEIRTYQLNRS
STFLPAVIQIANVSTLPGIVKASIALPDVHAGYGFSIGNVAAFNMNNEKAIISPGGVGFD
INCGVRLIRTNLFYDDIKDKQEELTQLLFNHIPVGVGSQGFILCNQENLDDALCLGMDWC
IKEGYSWIEDKVNCEDNGRSLYADSNFVSIRAKKRGITQMGTLGAGNHYAEIQIVDEIYD
KQSAKLMGIEKKNQVCVMIHSGSRGLGHQVATDALIEMEKSMKKYKLNVIDKQLACTPIH
SKEGKNYLKAMGAACNFAWINRSSMTFLARQTFSKIFNQSPDDLDMHVIYDVSHNIAKIE
EHYFDGKIQNLLVHRKGCTRAFPPFHPLVPLDYQYCGQPILIGGTMGTYSYVLTGTEKAM
QATFGSTCHGAGRALSRNKSRNSLSYVDVLNKLKDEHISIRVASPKLIMEEAPESYKNVS
DVVQTCHDAGISNKCFRLKPVAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggagcggaaatggaataacgacgtatttggtttcatcgaaaaggcgaaggaaacaaac
ctgtacaaagttaataaggggctagttccagatatgaatgtcatagggcatatgtattta
aatgatagattaaaactgttgatagatgatgagattagaacttatcaattgaatagaagc
tctacctttctaccagcagttattcaaatagctaatgtatctacattaccaggaatagta
aaagcatccattgctcttcccgatgtacatgcaggttatggattttccatcggaaacgtt
gcagcatttaatatgaataatgaaaaagcaataatatctcctggaggtgttggtttcgat
ataaattgtggggttcgcttaataagaactaatttattttatgatgatataaaagataaa
caagaagaattaacacagttattatttaatcatatacctgtaggagttggatctcaagga
tttattttatgtaatcaagaaaatctagatgatgctttatgtttaggtatggactggtgc
attaaagaaggctattcatggattgaagataaagtaaattgtgaagataatggacgtagt
ttatatgcagatagtaattttgtatctatacgagctaaaaaaagaggtataacccaaatg
ggtacattaggagctggtaatcattatgcggagatacaaattgttgatgaaatttatgat
aaacaaagtgctaaattaatgggaatagaaaaaaaaaatcaagtatgtgttatgatacat
tcaggaagtcgaggtctggggcatcaagtagctacagatgcattaattgaaatggaaaag
agtatgaaaaaatataaattaaatgtaattgataaacaattagcatgtacaccaatacat
tcaaaagaaggaaaaaattatttaaaagctatgggagctgcttgtaattttgcatggatt
aatagatcatctatgacttttttagctagacaaaccttttctaaaatttttaatcaatct
ccagatgatctagatatgcatgtgatatacgatgtatcacataatatagcaaaaattgaa
gaacattattttgatggtaagatacaaaatttattagtacatagaaaagggtgcaccaga
gcttttcctccttttcatccattagtcccactagactatcaatattgtggacaacctata
ttaataggtggtactatgggtacatattcttatgtactcacaggtactgaaaaagcgatg
caagctacttttggatccacttgtcatggcgctggtagagctttaagtagaaacaaaagc
agaaattctttaagttatgtagatgttctaaataaactaaaggatgaacatatatccata
cgagttgcttccccaaaattaattatggaagaagctcctgagtcttataaaaatgtatcg
gatgttgttcaaacttgtcatgatgcgggtatatcgaacaagtgctttcgacttaagccg
gttgctgttataaaggggtga
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