Pseudomonas maumuensis: KSS90_02455
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Entry
KSS90_02455 CDS
T07719
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmam
Pseudomonas maumuensis
Pathway
pmam03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmam00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSS90_02455 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmam03021
]
KSS90_02455 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmam03400
]
KSS90_02455 (rpoC)
Enzymes [BR:
pmam01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSS90_02455 (rpoC)
Transcription machinery [BR:
pmam03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSS90_02455 (rpoC)
DNA repair and recombination proteins [BR:
pmam03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSS90_02455 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QXH57088
UniProt:
A0ABX8NM27
LinkDB
All DBs
Position
520000..524199
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKDRDGSITKNTRIVDTTVGRALLFQVVPAGLPFDVVNQSMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVVDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEQWVEFIELNSIDEVVVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEENITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEISESGDSSFIKGDQMELTQVLVENERLAGEDKFISKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagtcaagaag
ccggaaaccatcaactaccgtacgttcaagcctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgcggcgtgatctgcgagaagtgcggcgttgaagttgccctggccaaggttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctac
ttcgagagctacgtggtgatcgatccgggcatgaccaccctcgagaagggtcagctgctg
aacgacgagcagtacttcgaagcgctggaagagttcggtgacgacttcgacgcccgcatg
ggtgccgaggctgtccgcgaactgctgcacgctatcgacctggagcacgagatcggtcgc
ctgcgcgaagaaattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgc
ctgaagctgatggaagctttccagggctcgggcaacctgcctgagtggatggtcctgacc
gttctgccagtcctgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctcgacaacggccgtcgcggtcgcgccatcactggttcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacttgctcggtaagcgcgtggactactccggtcgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccggaggtgtgggacgttctcgccgaggtgatccgcgaacacccc
gtactgctcaaccgtgcgccgaccctgcaccgtctgggtatccaggcctttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgctggtctgcgccgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagccgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagatcgtgat
ggcagcatcaccaagaacacccgtatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggtagtaccggccggcctgccgttcgacgtcgtcaaccagtcgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggtgggtctgaaagagaccgtgatcttc
gctgaccagctgatgtacaccggttttgcctactcgaccatttccggcgtttcgatcggc
gttaacgacttcgttatcccggacgagaaagcccgcatcatcggtaccgctaccgacgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaggtcatcgacttgtggtccaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcgtcgatcgcgagggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggccgactccggtgcgcgtggttccgccgctcagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtactgcagtacttcatctcgacccacggtgctcgt
aaaggtctggcggataccgcgttgaaaaccgcgaactccggttacctgactcgccgtctg
gtagacgttgcccaggatctggtcgtgaccgagatcgactgcggcaccgaccagggcctg
ctgatgaccccgcacatcgaaggcggtgacgttgtcgagccgctgggtgagcgcgtactg
ggccgtgtcattgcccgtgacgtgttcaagccaggcaccgaggacgtcatcgtcccggcc
ggtaccctggtcgacgagcagtgggtcgagttcatcgagctgaacagcatcgacgaagtc
gtcgtgcgttcgccgatcagctgcgaaacccgctacggcatctgcgccaagtgctacggc
cgcgacctggcgcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgca
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacttcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggtcgagcgcgccgatggcaacctggttgccgtatcgcgttccggc
gagctggccattgccgacgaattcggccgtgagcgtgagcgttacaagctgccttacggt
gccgtgatttcggtcaaggaaggtgacaaggtcgaagctggcgccattgtcgccaagtgg
gacccgcacacccacccgatcgttaccgagctgaaaggtaccgtgaccttcgtgggcatg
gaagaaaacatcaccatcaagcgtcagaccgatgaactgaccggcttgaccaacattgag
gttctggacgtcaaggatcgccctgccgcaggcaaggaaatccgtccggcaatcaagatg
gtcgacgccaatggcaaggacctgtacctgccaggtaccgacgtacctgcccagtacttc
ctgccggccaacgccctcgtcggtgtggctgacggtgcccagatcggcgtcggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccacgc
gttgccgacttgttcgaagcgcgccgtccgaaagaagcctcgatcctggctgaagtcagc
ggcaccattgcgttcggtaaagagaccaagggcaagcgtcgtctggtcattactccgacc
gacggtagcgatccgtatgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgtgaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatctccgagtcgggcgattccagcttcatcaagggcgaccagatg
gaactgactcaggtcctggtagagaacgagcgtctcgccggcgaagacaagttcatctcc
aagttcacccgcgtgctgctgggtatcaccaaggcctcgctgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaactggcaag
cgtgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctatcacagcgagcgcaagcgtcgccgtgatgccgacaaaccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcactgaattccagcggtaactaa
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integrated database retrieval system
