Pseudomonas maumuensis: KSS90_07265
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Entry
KSS90_07265 CDS
T07719
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmam
Pseudomonas maumuensis
Brite
KEGG Orthology (KO) [BR:
pmam00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmam03019
]
KSS90_07265 (hrpA)
Enzymes [BR:
pmam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KSS90_07265 (hrpA)
Messenger RNA biogenesis [BR:
pmam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KSS90_07265 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
AAA_25
T2SSE
ResIII
NACHT
ABC_tran
AAA_30
SRP54
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QXH57991
LinkDB
All DBs
Position
1555221..1559126
Genome browser
AA seq
1301 aa
AA seq
DB search
MTDHAIDQLLKNLDHAMIADRHRLRRQLHELRKRPDEGKLAQWVEKVQASCAQVTARQQS
VPSIRYDDNLPIAAKRDEIKKALAEHQVLVIAGETGSGKTTQLPKICLELGRGSHGLIAH
TQPRRIAARSVAARVAEELGTPLGALVGYQVRFEDQSDSNTLVKLMTDGILLAETQHDRF
LERYDTIIVDEAHERSLNIDFLLGYLKTLLHRRPDLKLIITSATIDLERFSKHFDGAPII
EVSGRTYPVETWYRPLTSEQDEEGNQVEEDLSVDQAILASLDEIAQHERSQGKGPGDVLV
FLPGEREIRDAAEILRKAQLRHTEILPLYARLSPAEQQRIFQSHSGRRVVLATNVAETSL
TVPGIRYVIDSGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGICIRLYSED
DFNGRPAFTDPEILRTNLAAVILQMLHLRLGAIDAFPFIEPPDGKAISDGFNLLQELSAV
NRENQLTPLGRQLARLPIDPRLGRMLLEGARQGSLQEVLIVASALSVQDPRERPPERQQA
ADQAHAQWKDVDSDFAALVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDAHRQ
LALICRDLQLTVNKDACDYQRMHKAILSGLLSQIGQKTEEGDYQGARQRRFWIHPSSGIG
RKRPQWVMAAELVETTKLYARMVAKIEPDWIEPLATHLIKKNHFEPHWEKKRGQVVAYEQ
ITLYGLILVGRRPVHFGPIDPVTSRELFIRDGLVGGEIQSRAKCLAANKRLLEQLDELEA
KARRRDILADEETLYAFYEARLPAEIHQTATFDAWYRMTSQKDANLLIMREEDVLAREAS
EVTAAQYPDHLQVGELRLSLSYHFEPNHPRDGVTVRVPAPLLPNLPGERLEWLVPGLLEA
KCIALVRNLPKALRKNFVPVPDFVKAALSRMVFGQGALPQALGHELLRMTGVRVSDEAWA
EATALVEGHLRMNIEVVDAQGKFLGEGRDLAELTARFAAASQAALALPRNDKAEQPVQAK
VFEQVAQTAQQKIAGLSMTVYPALVEDNGTVREGRFSTQAEAEFQHRRALQRLLLQQLAE
PAKFLRGKLPGLTELGLLYRELGRIEALVEDILLASLDSCVLEGEDSLPRDGAGLASLAE
RKRGNWSEHAERLARQTLEVLKLWHGLQKRFKGKIDLSQAVALNDIKQQLANLVYPGFVR
ETPGAWFKELPRYLKAVELRLEKLGSQVQKDRVWSGELANCWAQYQARADKHAQEGKRDE
QLTLYRWLLEEYRVSLFAQQLGTKVPVSDKRLSKQWSQVEA
NT seq
3906 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccacgccatcgaccaactgctgaagaacctcgaccacgccatgatcgccgac
cgacatcggttgcgccggcaactgcacgaactgcgcaagcgccccgacgagggcaagctc
gcgcagtgggtggaaaaggtccaggcgtcctgcgcccaggtcaccgcgcgccagcagagc
gtgccgagcattcgctacgacgacaacctgccgatcgccgccaagcgcgacgagatcaag
aaggccctggccgagcaccaggtgctggtgatcgccggcgagacaggttcgggcaagacc
acccagttgccgaagatctgcctggaactgggccgtggcagccatggcctgatcgcccac
acccagcctcggcggatcgccgcgcgcagcgtggcggcgcgggtcgccgaggagctgggc
acgccgttgggggcgctggtgggctaccaggtgcgcttcgaggaccaaagcgattcgaac
accctggtcaagctgatgaccgacggtatcctgctggccgagacccagcacgaccgcttc
ctcgaacgctacgacacgatcatcgtcgacgaggcccacgagcgcagcctgaacatcgac
ttcctgctcggctacctcaagaccctgctgcatcgccgccccgacctgaagttgatcatc
acttcggcgaccatcgatctggagcgcttttccaagcatttcgacggtgcgccgatcatc
gaggtgtccggccgtacctacccggtggaaacctggtaccgcccgctgaccagcgagcag
gacgaggagggcaaccaggtcgaggaagacctctcggtcgaccaggcgatcctcgccagc
ctcgacgagatcgcccagcacgagcgcagccagggcaagggcccgggcgacgtgttggtg
ttcctgcccggcgagcgcgagatccgcgacgccgccgagatcctgcgcaaggcgcagttg
cgccacaccgagatcctgccgctgtatgcgcggctgtcgccggccgagcagcagcggatt
ttccagtcccacagcggccggcgcgtggtgctggcgaccaacgtcgcggaaacctcgctg
accgtgccgggcatccgctatgtgatcgacagcggcaccgcccgcatcagccgctacagc
taccgcgccaaggtccagcgcctgcccatcgaggccgtttcgcaggccagtgcaaaccag
cgtaaaggccgctgcggccgggtcgagccgggtatctgcattcgcttgtacagcgaggat
gacttcaacggccggccagcgttcaccgatccggagatcctgcgcaccaaccttgccgca
gtcatcctgcagatgctgcacctgcgcctgggcgccatcgacgctttcccgttcatcgag
ccgccggatggcaaggccatcagcgacggcttcaacctgttgcaggagctgtcggcggtc
aaccgcgagaaccagctgacgccgctgggccgccagttggcgcgcctgccgatcgatcca
cggttgggccgcatgctgctcgagggcgcccgccagggcagcctgcaggaagtgctgatc
gtcgccagcgcactgtcggtgcaggatccgcgcgagcgcccgccggagcgtcagcaggca
gccgaccaggcccatgcccagtggaaggatgtcgattccgacttcgccgcgctggtcaac
ctgtggcgcggcttcgaggagcaacgccaggcgctgactgccaacccgctgcgcaactgg
tgccgcaagaacttcctcaactacttgcgcctgcgcgagtggcgcgacgcccaccgccag
ctggcgctgatctgtcgtgacctgcaactgaccgtgaacaaggatgcctgcgactaccag
cgcatgcacaaggcgattctcagcggcctgctcagccaaatcggccaaaagaccgaagag
ggcgactaccagggcgcacgccagcggcggttctggattcatccgtcgtcggggattggc
cgcaagcggccgcaatgggtgatggctgccgaactggtggaaaccaccaaactgtatgcg
cgcatggtggccaagatcgagccggactggatcgagcctctggccacccacctgatcaag
aagaaccacttcgaaccgcactgggagaagaagcgcggccaggtggtggcctacgagcag
atcaccttgtacgggttgatcctggtcggacgccgcccggtgcatttcggtccgatcgac
cccgtcacttcccgcgagctgttcatccgcgatggcctggtcggtggcgagatccagtcc
cgggccaagtgcctggcggccaacaagcgcctgctggagcagctcgacgaactggaggcc
aaggcccgccgacgcgacattctcgccgacgaagaaaccctgtacgccttctacgaagcg
cgcctgcccgcagagatccaccagaccgcgaccttcgatgcctggtaccggatgaccagc
cagaaggacgccaacctgctgatcatgcgcgaggaggacgtactggcccgcgaggccagc
gaggtcaccgcagcgcagtacccggatcacttgcaggtgggcgaactgcgcctgtcgctg
agctaccatttcgaaccgaaccatccacgtgacggcgtgaccgtgcgggtgccggcgccg
ttgctgcccaacctgccgggtgaacgcctggaatggctggtgccgggcctgctcgaggcc
aagtgcatcgctctggtgcgcaacctgcccaaggccctgcgcaagaacttcgtgccggtg
ccggacttcgtcaaggcggcactgtcgcgcatggtcttcggccagggcgcgttgccccag
gcactgggccacgagctgctgcgcatgaccggggtgcgggtatccgacgaagcctgggcg
gaagcgactgcgctggtggagggtcatctgcgcatgaacatcgaagtggtcgatgcccag
ggcaagttcctcggcgagggccgcgacctggccgaactgactgcccgttttgctgccgcc
agccaggccgccctggccttgccgcgtaacgacaaggccgaacagccggtgcaggccaag
gtgttcgagcaagtggcgcagaccgcccagcagaagatcgccgggttgtcgatgaccgtg
tacccggcactggtcgaggacaacggcacggtgcgcgaggggcggttctcgacccaggcc
gaagctgaattccagcaccgacgcgccctgcagcgcctgttgctgcagcagttggccgag
ccggccaagttcctgcgcggcaagctgccggggttgaccgagctgggtttgctgtatcgc
gaactgggccggatcgaggcgctggtggaggatatcctgttggccagcctcgacagttgc
gtgctcgaaggcgaagattcgctgccccgcgatggcgccggcctggcgtcgttggccgag
cgtaagcgtggcaattggagcgagcacgccgaacgcctggcacgtcagacgctcgaggtg
ctcaagctgtggcatggcttgcagaagcgcttcaagggcaagatcgacctgagccaggcg
gtggcgctcaacgacatcaagcagcaactggccaacctggtgtatccgggcttcgtgcgc
gagacgccgggggcctggttcaaggaattgccgcgctatctcaaggcggtggaactgcgc
ctggagaagctgggttcgcaggtgcagaaggaccgggtgtggagtggcgagctggccaat
tgctgggcgcaataccaggcccgtgccgacaagcatgcccaggaaggcaagcgcgatgag
caactgaccctgtaccgctggttgctggaggagtaccgggtgtcgttgttcgcccagcag
ttgggtaccaaggtgccggtttccgataagcgactgagcaagcagtggagtcaggtggaa
gcctaa
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