Pseudomonas maumuensis: KSS90_23250
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Entry
KSS90_23250 CDS
T07719
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmam
Pseudomonas maumuensis
Pathway
pmam03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmam00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS90_23250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmam03019
]
KSS90_23250
Enzymes [BR:
pmam01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS90_23250
Messenger RNA biogenesis [BR:
pmam03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS90_23250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QXH56205
UniProt:
A0ABX8NJI9
LinkDB
All DBs
Position
5205213..5207102
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AA seq
629 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPGGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLNFISACIFGGVGMN
PQVQAMAKGVDVLVACPGRLLDLAGQGSVDLSRVEILVLDEADRMLDMGFIHDVKKVLAR
LPAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALL
AHLITLGAWEQVLVFTRTKHGANRLAEYLEKHGLTAAAIHGNKSQNARTKALADFKANTV
RVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISMVAPDEEKL
LKSIERVTKQKIPDGDLMGFDASQVEAEKPEVRERQPNNGRGGRNQQPRGEGGKEGSGGR
KDKGKDKGRNKPSSEKSAEKDKSGEKQQQGQQRKPRDQKPRQQQNNGQKAAPVAAPNRDP
EEFLDDDVDNFGNRADYVSPYQNAKNQGRNRRPGGNGGQAQGQGQRSGGGQGQGQGRGNG
QQRQGSGEKRPRNGGGSNGGARRDNNGGRARREDASRQEPAVRNPRESQSAPVIIRKESK
LDRYPTPEQLDDLPSRPRGERPALLTRKG
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctcttgtccgcgctatcgaggctgcgggc
tatacccagcccactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgccgcccagacaggtactggtaaaaccggcggcttcgcgcttccgatcctt
gagcgtctgttcccgggcggccaccccgacaaatcgcaacgccatggccctcgccagccg
cgcgtgctggtgctgacccccacccgcgagctggctgcccaggtgcatgacagcttcaag
gtctatgcccgcgacctcaacttcatcagcgcctgcatcttcggcggtgtcggcatgaac
ccgcaggtccaggccatggccaagggcgtcgacgtcctggtcgcctgcccgggtcgcctg
ctcgacctggccggccaaggcagcgtcgacctttcgcgggtcgagatcctggtgctggac
gaagccgaccgcatgctcgacatgggcttcatccacgacgtcaagaaagtgctggcgcgc
ctgccggccaagcgccagaacctgctgttctcggcgaccttctccaaggacatcaccgac
ctcgccgacaaactgctgcacaaccccgagcgcatcgaggtcacgccgccgaataccacc
gtcgagcgtatcgagcagcgcgtctaccgcctgccggccagccacaagcgcgccctgctg
gcgcacctgatcaccctgggcgcctgggaacaggtgctggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgaatacctcgagaagcacggcctgaccgccgcggcgatccat
ggcaacaagagccagaacgcccgcaccaaggcgctggccgacttcaaggccaacaccgtg
cgcgtgctggtcgccaccgacatcgccgcccgtggcctggatatcgaccaactgccccac
gtggtcaacttcgagctgcccaatgtcgaggaagactacgttcaccgcatcggccgtacc
ggccgtgccggtcgctcgggcgaagccatctcgatggtcgcgccggacgaggaaaagctg
ctcaagagcatcgagcgcgtcaccaagcagaagattccggatggcgatctgatgggcttc
gacgcctcccaggtcgaggccgagaagccagaggtgcgcgagcgccagccgaacaatggc
cgcggtggccgcaaccagcaaccgcgcggcgaaggcggcaaggaaggcagtggcgggcgc
aaggacaaaggcaaggacaaaggccgcaacaagccttcgtccgaaaagtctgcggaaaag
gacaagtccggcgagaaacaacagcagggccagcagcgcaagccgcgcgatcagaagcca
cgtcagcagcagaataacggccagaaagccgcgcctgtcgccgcccccaatcgcgatcca
gaagagttcctcgacgacgacgtcgacaacttcggcaaccgcgccgactacgtcagcccc
taccagaacgccaaaaaccaggggcgcaaccgtcgcccgggtggcaacggggggcaagcc
caagggcaaggccagcgcagtggtggcggccaggggcaaggccagggccgtggcaatggc
cagcagcgccagggctccggtgaaaagcgcccacgcaacggcggcggcagcaatggcggc
gcccgacgcgacaacaacggcggccgtgcccgccgggaagacgcgtcccgccaggaaccg
gctgtccgcaacccccgcgagtcgcagagcgcgccagtgatcatccgcaaggaatccaag
ctcgaccgttacccgacgcccgagcaactggacgacctgccaagccgcccacgcggtgag
cgcccggcactgctgacccgcaagggctga
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