Pseudomonas mandelii: OU5_1539
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Entry
OU5_1539 CDS
T03626
Symbol
deaD
Name
(GenBank) cold-shock dead-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU5_1539 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pman03019
]
OU5_1539 (deaD)
03009 Ribosome biogenesis [BR:
pman03009
]
OU5_1539 (deaD)
Enzymes [BR:
pman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OU5_1539 (deaD)
Messenger RNA biogenesis [BR:
pman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OU5_1539 (deaD)
Ribosome biogenesis [BR:
pman03009
]
Prokaryotic type
rRNA helicases
OU5_1539 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
DeaD_dimer
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AHZ68618
UniProt:
A0A024E8F4
LinkDB
All DBs
Position
complement(1750121..1751794)
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AA seq
557 aa
AA seq
DB search
MTQETGGFAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAF
ALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEMLKLGFMDDLEVIFKALPPT
RQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAEGR
ARCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLK
DTRVAGKQLKLRRYRED
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgcttttaatcttaatccgaacattcttgcagcc
gtcatcgcgactggctacgaagagccttcggctattcagcagcaatcgatcccgatcatc
atggccggtcacgacatgattggtcaggcgcaaaccggtacgggtaaaaccgccgcgttc
gccctgccgatcctgcaccgcatcgatcctgctaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagcaaccgctttcgaaacctacgccaagcaa
atgccgggcgttaccgttgtggccgtttacggcggcgccccgatgggcccacaactgaaa
gcaatccgtaatggcgcacagatcgttgtcgccacgccgggccgtctgtgcgaccacctg
cgtcgtgacgaaaaagtcctgtcgaccgtgaaccacctggttctggacgaagcggacgaa
atgctcaaactgggtttcatggacgacctcgaagttatcttcaaggctctgccgccaacc
cgtcagaccgtgttgttctcggccaccctgccgcagtcgatccgtgccattgccgaacgc
catctgcgcgatccgcaacacgtgaagatccagaccaagactcagaccgttaccgcgatc
gaacaggctcacctgttggttcacgctgaccagaagacctcggctgtattgagcctgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgct
cagaaccaacgtgagcgcgtgatcgaatccctcaaggatggccgtctggacatcgttgtg
gcgaccgacgttgctgctcgtggcctggacgttccgcgcatcactcacgtattcaacgtt
gacatgccgtacgatccagagtcctacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgcactgttgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtaaccggtcagaaagttgccgaagtccgcctgccggatgctcaggccgttctc
gatgcccgcatcaagaaactgaccaacagcctgtcgccactggtagctgatgctgaatcg
acccacggtgatctgctggatcgcctgactgccgacatcggttgcaccccgcgtgcactg
gccgctgctctgctgcgcaaggcaaccaacgctcaggcgctgaccctggccgcgatcgag
aaagaacgtccactggtgccgaacaacgcgccgcgtggcgatcgtccagagcgcaccggt
gatcgtccggaccgtggtgatcgtgagcgtcgtgctccggttccattggccgaaggtcgt
gctcgttgccgtactgcgttgggtgcgcgcgatggcatcgctgccaagaacctgctgggc
gctatcctcaacgagggtggcctggctcgcgaagcaatcggtcgcatccaggtgcgtgac
agcttcagcctcgtcgagctgccggaagatggtctggagcgtctgctgaccaagctgaag
gacactcgcgttgccggtaagcagttgaagctgcgtcgctatcgcgaagattga
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