Pseudomonas mandelii: OU5_1863
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Entry
OU5_1863 CDS
T03626
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU5_1863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pman03019
]
OU5_1863
03400 DNA repair and recombination proteins [BR:
pman03400
]
OU5_1863
Enzymes [BR:
pman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OU5_1863
Messenger RNA biogenesis [BR:
pman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OU5_1863
DNA repair and recombination proteins [BR:
pman03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
OU5_1863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
HTH_40
HTH_23
Sigma70_r4_2
GerE
Motif
Other DBs
NCBI-ProteinID:
AHZ68942
UniProt:
A0A024E801
LinkDB
All DBs
Position
complement(2120118..2122244)
Genome browser
AA seq
708 aa
AA seq
DB search
MLEQAQRVLKDIFGYDSFRGRQGAIIERVASGGDALVLMPTGGGKSLCFQVPALLREGLA
VVVSPLIALMDDQVATLEELGVAAAALNSTLSAEQQRDLAARIKRGEVKMLYLAPERLVQ
PRMLAFLQSLEIALFAIDEAHCVSQWGHDFRREYLQLGQLAELFPNVPRIALTATADKRT
REEIVDRLHLQNAERFLSSFDRPNIFYRIVPKEQPRKQLLAFLAERRSDAGIVYCLSRKK
VDEVAVFLSEQGFPALPYHAGLPNDTRAHHQKRFLNEEGLIMVATVAFGMGIDKPNVRFV
AHLDLPKSLEAYYQETGRGGRDGLPADAWMAYGLQDVVMLKQMLQNSEGDERHKRLEQHK
LDAMLSLCEETRCRRQTLLAYFDEDMPEPCGHCDNCVDGVQTWDATEPARQALSAIYRTG
QRYGVGHLVDVLLGKDNEKIRSFGHQHLSVYGVGKAMGESEWRSLFRQLVARGLADIDLE
GYGGLRLSDTCRPLLKGEVTLELRRDLKPQTTAKSSKSQASQLVRGEEREQWEALRALRR
KLAEEHGVPPYVIFPDSTLLEMLRSQPTSLAEMATVSGVGARKLERYGEAFLEVLGGQVE
APKVVADVRHELITLARAGMTPLQIAGQLQCSEKNVYTMLAEAIGKQQLSLEQALDLPEE
LMGEVQDAFLDGEGELPPVSEIAALFAGRVPEGVLYCVRAALQSEFEV
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgctcgaacaggctcaacgcgtcctcaaggacatcttcggctacgacagtttccgtggc
cgccagggtgcaatcattgagcgcgtggccagtggcggtgacgccttggtgctgatgcct
accggcggcggcaaatccttgtgcttccaggtgccggcgctgctgcgcgaaggcctggcc
gtggtggtatcgccgttgatcgcactgatggacgatcaggtcgcgaccctcgaagagctc
ggcgtcgccgccgctgcattgaactccaccctgagcgccgagcagcagcgtgatctcgcc
gcgcggatcaagcgcggcgaagtgaaaatgctgtatctggcgcccgagcgtctggtccag
ccacgcatgctggctttcctgcaaagccttgaaatcgccctgttcgccatcgacgaagca
cactgcgtgtcccaatggggccatgacttccgtcgcgaatacctgcaactgggccagttg
gcggagctgttccccaacgtcccgcgtattgccctgacggccacggccgacaagcgcacc
cgcgaagaaatcgtcgaccgtttgcatctgcagaacgccgagcgctttctctcgagcttc
gaccgtccgaacattttctaccgcatcgtacccaaggagcagccacgcaagcagttgctg
gcgttccttgccgagcgccgcagcgatgccggtatcgtctattgcctgtcgcgcaagaaa
gtcgacgaagtcgcagtgttcctcagcgagcaaggttttccggcgctgccgtaccacgcc
ggtttgcccaacgacacccgggcccatcaccagaagcgtttcctcaacgaagaagggctg
atcatggtcgccaccgtggcgttcggcatgggcatcgacaagcccaacgtgcgctttgtc
gcccacctcgatttgccgaaatcccttgaggcgtactaccaggaaaccggtcgcggcggc
cgtgatggtctgccggcggatgcctggatggcttacggcctgcaagatgtggtgatgctc
aagcagatgctgcaaaactccgaaggcgacgagcgccacaagcgtctggagcaacacaag
ctcgacgccatgctctcgctctgcgaagaaacccgctgccgtcggcaaaccttgctggcc
tacttcgacgaagacatgcccgagccgtgcggccattgcgacaactgcgtcgatggcgtg
cagacttgggacgccaccgagccggcccgtcaggcgctctcggcaatctaccgcaccggc
cagcgttatggcgtcgggcatctggtggacgtgctgctgggcaaggacaacgaaaagatc
cgcagcttcggccatcaacacctgtcggtgtatggcgttggcaaggccatgggcgagagc
gaatggcgctccctgttccgccagctggtggcccgtggcctggcagacattgacctcgaa
ggctacggcggcctgcgcctgagcgatacgtgccggccgctgctcaagggcgaagtgacc
ctggaactgcgccgcgacctcaagccgcagaccaccgccaaaagcagcaagagccaggcg
agccagctggttcgtggcgaagaacgcgaacagtgggaagccttgcgtgccttgcgtcgc
aagctcgccgaggaacatggcgtgccgccttatgtcatcttccccgactcgacactgttg
gaaatgctccgcagccagccaacctcgctggcggaaatggccacggtcagcggcgtcggc
gcacgcaagctcgaacgttacggcgaggccttcctcgaagtgctgggcggtcaggtcgag
gcaccgaaagtcgttgccgacgtgcgccacgagttgatcaccctcgctcgcgcaggcatg
acgccgctgcagatcgccggtcagctgcaatgctcggaaaagaatgtctacaccatgctt
gccgaggccatcggcaagcagcagttgtcgctggaacaagcgctggacctgcccgaagaa
ttgatgggcgaagttcaggatgccttcctcgatggcgagggcgagttgccgccagtgtcg
gagattgccgcgctgttcgccgggcgagtgccggaaggtgtcttgtactgcgttcgggcg
gcgctgcaatccgaattcgaggtttaa
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