Pseudomonas mandelii: OU5_1921
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Entry
OU5_1921 CDS
T03626
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pman
Pseudomonas mandelii
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pman03019
]
OU5_1921
Enzymes [BR:
pman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
OU5_1921
Messenger RNA biogenesis [BR:
pman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
OU5_1921
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_19
AAA_22
nSTAND3
AAA_25
NACHT
T2SSE
Dicer_dsRBD
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AHZ69000
UniProt:
A0A024E8T9
LinkDB
All DBs
Position
complement(2190017..2193928)
Genome browser
AA seq
1303 aa
AA seq
DB search
MTDESPSIDKLLKNLDHAMLADRHRLRRQLLELRKKPDEAKLAQWVTRMQASCDQVLARR
ASLPVIRYDDSLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLI
GHTQPRRIAARSVASRVAEELATPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQND
RYLERYDTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSRHFDDAP
IVEVSGRTFPVETWYRPLTLEQDEEGNRVEDDLTVDQAILATLDEIAAFERSERKSPGDV
LVFLPGEREIRDAADMLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICIRLYG
EDDFIGRPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELS
AVDRNSQLTPLGRQLARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQ
QAADQAHAQWKDVDSDFAGLVNLWRGFEEQRQALTASPLRNWCRKNFLNYLRLREWRDSH
RQLSLICRDMQLSLNKEPADYPKLHKAVLSGLLSQIGQKTDEGDYLGARQRRFWIHPSSG
LGKKRPQWLMTAELVETTKLYARMVAKIDSDWIEPLAGHLIKKNHFEPHWEKKRGQVVAF
EQITLFGLIVVGRRPVHYGPIDPVVSREFFIREGLVRGEIQSKAKCLTANAQLLEQLDEL
EAKARRRDILADEETLFAFYDARLPAEIHQTATFDSWYRVNSQKDPQLLIMREEDVLARE
ASEVTALHYPDTLHIGDLELALSYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGVI
EAKCIALVRNLPKALRKNFVPVPDFVKAALQRLTFAEGSLPQALGRELLRMTGARVSDEA
WAEASQQVDSHLRMNLEIVDGQGKFLGEGRDLAELTARFAEASQAALAVPQTAKNQQPVE
PKVFAAVAEKTQQKIAGLSMTVYPALVEESGTVKEGRFSTPAEAEFQHRRALQRLLMQQL
AEPAKFLRGKLPGLTELGLMYRELGRIDALVEDILLASLDSCILEGEDPLPRDGAGLASL
AERKRGGWTEHAERLAKLTLEILKHWHGLQKRFKGKIDLAQAVALNDIKQQLSHLVYPGF
VRETPMQWLKELPRYLKAVEQRFEKIGAQVQRDRVWSGELSGLWAQYQTRANKHAQEGKR
DPQLELYRWWLEEYRVSLFAQQLGTKVPISDKRLNKQWTQVEP
NT seq
3912 nt
NT seq
+upstream
nt +downstream
nt
atgactgacgaatcgccttccatcgacaaactgctgaaaaacctcgatcacgccatgctc
gccgaccgccaccggctgcggcggcagttgcttgagctgcgcaagaaacctgacgaggcc
aagctggcccagtgggtgacgcgcatgcaggcgtcctgtgaccaggtgctggcgcggcgt
gccagcctgccggtgattcgttacgacgacagtttgccgatcgccgccaagcgcgacgaa
atcaaggaagcgctgctcaagcatcaggtgctgatcatcgccggcgaaactggctcgggt
aaaaccacccagttgccgaagatctgcctggaaatcggccgcggccagcatggcttgatc
ggccacacccaaccgcgtcgaatcgctgcgcgcagcgtggccagccgggttgccgaagaa
ctggcgacgccattgggcgcgctggtcggctatcaggtgcggttcgaggatcagagcgac
tccaacaccctgatcaaattgatgaccgacggcatcctgctggcggaaacccagaacgac
cgttacctcgaacgctacgacacgatcatcgtcgacgaagcccacgaacgcagcctcaac
atcgacttcctgctcggttacctgaaaaccctgctgccgcgtcgcccggacctgaaagtc
atcatcacctcggcgaccatcgacctggaacgcttctccaggcatttcgatgacgcaccc
atcgttgaagtttcgggccggactttcccggttgaaacctggtatcgcccgctgacgctt
gagcaggacgaggagggcaaccgcgtcgaggacgacttgaccgtggatcaggcgatcctc
gccaccctcgacgaaattgccgcgttcgaacgtagcgagcgcaagagccccggcgacgtg
ttggtgttcctgcccggcgagcgcgagattcgcgacgccgccgacatgctgcgcaaggcc
cagctcaagcacaccgagattctgccgctgtacgcgcgcttgtcgccggccgaacagcag
cggattttccagtcgcaccctggccgtcgcgtggtgctggcgaccaacgtcgcggaaact
tcgctgaccgtgccgggcatccgttacgtgatcgacagcggcaccgcgcgcatcagccgt
tacagctaccgcgccaaggtccagcgtctacccatcgaagccatttcccaggccagcgcc
aaccagcgtaaaggtcgatgcggtcgggtcgagccgggtatttgcattcgactctatggc
gaagacgacttcatcggtcgccctgaatttaccgacccggaaattctgcgcaccaacctc
gccgccgtgattttgcagatgctgcacttgcgtctcggcgagatcaccgacttcccgttt
atcgaaccgccggatggcaaggcgatcagcgacggtttcaacctgctgcaagaactctcg
gccgtggaccgcaacagccagctgaccccgctcggccgccagttggcgcgcctgccggtg
gatccgcgcatgggccgcatgctgctggaagcggcgaaactcggcagcttgcaggaagtg
ttgatcgtcgccagcgccatgtcgatccaggacccgcgcgagcgtccgccggagcgccag
caagcggcggatcaggcccacgcacagtggaaggacgtggactcggatttcgccgggctg
gtcaatctgtggcgtggttttgaagagcagcgtcaggccctgaccgccagcccgctgcgc
aattggtgccgcaagaacttcctgaattacctgcgtttgcgcgaatggcgcgactcgcac
cgtcagttgagcctgatctgccgcgacatgcagttgagcctgaacaaagagccggcggac
tacccgaagctgcacaaagccgtgctctcgggcctgctcagccagatcggccagaaaacc
gatgagggcgattacctcggcgcccgtcagcggcgtttctggattcacccatcctccggg
ttgggcaagaagcgcccgcaatggctgatgaccgccgaactggtggaaaccaccaagctc
tatgcgcggatggtggccaagatcgactcggactggatcgagccgctggccgggcacctg
atcaagaaaaaccacttcgaaccgcattgggagaaaaagcgtggccaggtcgtggccttc
gagcagatcacgctgttcgggctgatcgtggtgggtcgccggccggtgcattacgggccg
atcgatcccgtggtttctcgtgagttcttcattcgcgaaggcctggtgcgcggcgagatt
caatccaaggccaagtgcctgacggccaatgcgcaactgctggaacaactcgacgaactg
gaagccaaggctcggcgtcgcgacattctcgctgacgaagaaaccctgttcgctttctac
gatgcgcgattgccggcggagatccaccagaccgcaacgttcgacagctggtaccgggtc
aacagccagaaagacccgcagctgctgatcatgcgcgaagaagacgttctggcccgtgag
gccagcgaagtcaccgccctgcattacccggacaccttgcacatcggcgatctggaactg
gccctgagttaccacttcgagccgaatcacccgcgcgatggtgtgaccctgcgcgtgccg
gcgccgctgttgccgatgttgccgccggaacgtctggaatggctggtgccgggcgtgatc
gaggccaagtgcatcgcgctggtgcgcaacctgcccaaggccctgcgcaagaatttcgtg
ccggtgccggacttcgtcaaagccgcgttgcagcgcttgaccttcgccgagggctcgttg
ccgcaggcgttgggccgcgagctgctgcgcatgacgggcgcgcgggtcagcgatgaggcg
tgggcggaagcttcacagcaagtcgacagtcatctgcggatgaacctggaaatcgtcgac
ggccagggcaagttcctcggcgaagggcgagatctggccgagttgaccgcacgctttgcc
gaagccagccaagccgcgttggccgtgccgcaaaccgcgaaaaaccaacagccggtggaa
ccgaaagtctttgccgccgtcgccgagaaaacccagcagaagatcgccgggttgtcgatg
acggtgtatccggcgctggtggaagagagcgggacagtcaaggaagggcgtttttcgacc
cccgccgaggccgagttccagcatcgccgcgccttgcagcgattgctgatgcagcagttg
gccgagccggcgaagttcctgcgcggcaagctgccggggctgaccgagctggggctgatg
taccgtgaactggggcgcattgatgcgctggtggaagacattctgctggccagcctcgac
agttgcattctcgagggcgaagacccgttgccacgggatggcgccgggctggcctcgttg
gccgagcgcaagcgcggtggctggactgagcacgccgagcgcctggccaagttgacgctg
gagattctcaagcactggcacggcctgcagaaacgcttcaagggcaagattgatctggcg
caagccgtggccctgaacgacatcaagcagcagctcagtcatctggtgtatccggggttt
gtccgggagacgccgatgcagtggctcaaggaattgcctcgttacctgaaggctgtcgag
caacgcttcgagaagattggtgcacaggtgcagagggatcgggtctggagtggcgaactg
tccggtctctgggcccaataccagacccgcgccaacaaacacgcccaggaaggcaagcgc
gatccgcaactggagctctatcgctggtggctggaggaataccgggtttcgctgttcgcc
cagcaactggggaccaaagtgccaatctccgacaagcgcctgaacaagcaatggacccag
gtcgaaccctga
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integrated database retrieval system
