Pseudomonas mandelii: OU5_2924
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Entry
OU5_2924 CDS
T03626
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU5_2924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pman03019
]
OU5_2924
03016 Transfer RNA biogenesis [BR:
pman03016
]
OU5_2924
Enzymes [BR:
pman01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
OU5_2924
Messenger RNA biogenesis [BR:
pman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
OU5_2924
Transfer RNA biogenesis [BR:
pman03016
]
Prokaryotic type
tRNA degradation factors
OU5_2924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
RNase_II_C_S1
TRAM
OB_Dis3
TRAM_2
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
AHZ70003
UniProt:
A0A024ECC3
LinkDB
All DBs
Position
complement(3302882..3305512)
Genome browser
AA seq
876 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPANREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGMIVEVVSRAHETIVGRYFEEGGIGFVVADNPKIQQEV
LVTPGRNANAQIGQFVEVKITHWPTPRFQPQGDVVEVVGNYMAPGMEIDVALRTYDIPHV
WPEAVLKEAAKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFS
GGWKLYVAIADVSSYVKIGSALDNESQVRGNSVYFPERVVPMLPEQLSNGLCSLNPHVDR
LAMVCEMTISKTGEMTDYCFYEAVIHSHARLTYNKVSAMLETPKLTEARQLRGEYTDVLP
HLKQLYALYKVLLAARHVRGAIDFETQETRIIFGTERKIAEIRPTVRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPSPKDYQALLA
SIKDRPDFHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVRRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTISAPIGRKKRGTEKTEPAAKTSAKTAAEP
APAKTGRRPAKEKAVEAYRPSDAAAKNAELRKSRELKQALLSEAKSGGKAASGGKTGRSA
PDKAPGSKPSKHRKGPPKAGSAPAKSGGARKPKAKS
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctattcctagccgcgaactgatccttcagcaccttgctgatcggggttcgcctgctaac
cgcgagcagttggtggaagagtttggtctgaccacggaagaccagatcgaagccctgcgt
cgccgcctgcgcgccatggagcgcgacgctcaactgatctatacccgtcgcggcacctat
gcgcctgtggataagctcgacctgatcctgggccgcatcagcggtcaccgtgacggcttc
ggcttcctggtcccggacgacggcagcgatgacctgttcatgagcccggcgcaaatgcgc
ctggtgttcgatggtgaccgagccctggcccgtgtgtctggcctcgaccgtcgcggtcgt
cgcgaaggcatgatcgtcgaagtggtgtcccgtgcccacgagaccatcgtcggtcgctac
ttcgaagaaggcggtatcggcttcgtggtggcggacaatccgaagatccagcaagaagtg
ctggtcactccgggtcgtaacgccaacgcgcagatcggtcaattcgtcgaagtgaagatc
acgcactggccgaccccacgcttccagccgcaaggcgacgtggtcgaggtcgtgggcaac
tacatggcgccgggcatggaaatcgacgttgccctgcgcacctacgatattcctcacgtc
tggcccgaggcggtgctcaaagaagccgccaagctcaagcctgaagttgaagagaaagac
aaagagaagcgcatcgacctgcgtcatctgccgttcgtgaccatcgacggtgaagatgcg
cgcgacttcgatgacgcggtttactgcgaagccaagcctggcaagctgcgcctgttctcc
ggcggctggaagttgtacgtggcgattgccgacgtttccagctacgtgaagatcggttcg
gcactggataacgaatcccaggttcgcggcaactcggtgtacttccccgagcgcgtcgtg
ccgatgctgccggagcagctgtccaacggcctgtgctcgctgaacccgcacgtcgatcgc
ctggccatggtttgcgagatgaccatctctaaaaccggcgagatgaccgactactgcttc
tatgaagcggtgattcactcccatgcccgcctgacctacaacaaggtcagcgcgatgctg
gaaacgccgaaactcacagaagcgcgtcagctgcgtggcgagtacaccgacgtcctgcca
cacctcaagcagctttacgcactgtacaaagtgctgctggctgctcgtcacgtgcgtggc
gcgatcgacttcgaaacgcaggaaacccggatcattttcggtaccgagcgcaagattgcc
gaaatccgtccgaccgtgcgtaacgatgcgcacaagctgatcgaggaatgcatgctggcg
gccaacgtggccaccgccgaattcctgaaaaagcacgaaatccctgcgctgtatcgcgtc
cacgacggtccgccaccggagcgtctggaaaaactgcgcgccttcctcggcgagctcggc
ctgtccttgcacaaaggcaaggacggcccgtcgccgaaggattaccaggccttgctggcc
agcatcaaggaccgtccggatttccacttgatccagaccgtcatgctgcgctcgttgagc
caggcggtgtacagcgccgataaccagggccacttcggcctgaattacgaagcctatacc
cacttcacctcgccgatccgccgctacccggacttgctcacgcaccgggcgatccgcagc
gtcatccattccaagcagaacaccccgcacgttcgccgtgccggcgcgatgactattccg
aaagcgcgcatctatccatacgacgaagcggcgctggaacagctcggcgagcaatgctcg
atgagcgaacgccgtgccgacgaagccacccgcgacgtggtgaactggctcaagtgcgag
ttcatgaaagaccgtgtgggcgaatcgttcccgggtgtgatcaccgcagtgaccggtttt
ggtctgttcgtcgagctgaccgacatctacgtcgaaggcctggtgcacgtcaccgcgctg
ccgggcgattactaccacttcgaccctgtgcaccaccgcctcgccggtgagcgtaccggt
cgcagcttccgccttggcgacaccgttgaagtgcgcgtgatgcgcgttgacctcgacgag
cgcaagatcgacttcgagatggcggaaaaaaccatcagcgcgccgatcggccgcaaaaag
cgcggaactgaaaagaccgagccagccgccaagacatcggccaaaaccgcagcagaaccg
gcaccggcaaaaaccggtcgtcgtcctgccaaggaaaaggctgtcgaagcctatcgccca
agcgatgctgcggcgaaaaatgccgagttgcgtaaaagccgtgaattgaaacaggcgtta
ctgtctgaagcaaaaagcggcggtaaagcggcgtctgggggaaagaccggacggtcggcg
cctgacaaggcccccggcagcaagccaagcaaacaccgtaaaggcccgccgaaagcgggt
tcggccccagccaaaagcggcggtgcgcgaaaacctaaggccaagtcatga
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