Pseudomonas mandelii: OU5_3706
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Entry
OU5_3706 CDS
T03626
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pman
Pseudomonas mandelii
Pathway
pman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU5_3706
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pman03021
]
OU5_3706
03019 Messenger RNA biogenesis [BR:
pman03019
]
OU5_3706
Transcription machinery [BR:
pman03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OU5_3706
Messenger RNA biogenesis [BR:
pman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OU5_3706
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Spore_III_AA
AAA
Motif
Other DBs
NCBI-ProteinID:
AHZ70785
UniProt:
A0A024EE07
LinkDB
All DBs
Position
4181263..4182522
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITELLELAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
YDRPENAKNKILFENLTPLFPTVRMKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANIARNNPEVHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAIEFLVDKLKTTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatctgactgaactcaagcaaaagccgattaccgaactgctcgaattggccgaacag
atgggcatagaaaatatggcccgttcgcgcaagcaggacgtgattttctccctgctcaaa
aagcacgcgaaaagcggcgaggaaatctccggtgatggcgtgctggagattctccaggac
ggcttcggcttcctgcgctccgctgacgcttcctatctcgccggcccagacgatatctac
gtctcgccgagccagatccgtcgcttcaacttgcgcaccggtgacaccatcgttggcaag
atccgccctccgaaggaaggcgagcgttatttcgcgctgctcaaggtcgatacgatcaac
tacgatcgtcccgagaacgcgaaaaacaagattctcttcgagaacctgaccccgctgttc
ccgaccgtgcgcatgaagatggaagccggcaacggttccaccgaagacttgaccggtcgt
gtcatcgacctgtgcgccccgatcggcaaaggccagcgcggtctgatcgttgcaccgccg
aaagccggtaaaacgatcatgctgcagaacatcgccgccaacatcgcccgtaacaaccct
gaagttcacctgatcgtattgctgatcgatgaacgtccggaagaagtgaccgaaatgcag
cgcaccgtgcgcggcgaagtggttgcctcgacgttcgatgagccgccaacccgccacgtg
caggttgcagaaatggtgatcgagaaggccaagcgcctggtcgaacacaagaaagacgtg
gtgatcctgctcgactccatcacccgtctggctcgtgcctacaacaccgtgatcccgagc
tccggcaaagtactcaccggtggtgtcgatgcccacgcactggagaaaccgaaacgtttc
ttcggcgccgcgcggaacatcgaggaaggcggttcgctgaccatcatcgccaccgcgctg
gttgaaaccggctcgaaaatggacgaagtgatctacgaagaattcaaaggcaccggcaac
atggaactgcctctggaccgtcgtatcgctgaaaaacgcgtcttcccggccatcaatatc
aaccgttccggcacccgccgcgaagagttgctgacggccgacgacgagttgcagcgcatg
tggattctgcgcaagctgctgcacccgatggacgaaattgcggccatcgagttcctggtc
gacaagctgaaaacgaccaagaccaacgacgagttcttcttgtcgatgaagcgcaagtaa
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