Pseudomonas mandelii: OU5_3894
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Entry
OU5_3894 CDS
T03626
Symbol
rhlE1
Name
(GenBank) putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OU5_3894 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pman03019
]
OU5_3894 (rhlE1)
Enzymes [BR:
pman01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OU5_3894 (rhlE1)
Messenger RNA biogenesis [BR:
pman03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OU5_3894 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AHZ70973
UniProt:
A0A024EF54
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All DBs
Position
complement(4376324..4378099)
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AA seq
591 aa
AA seq
DB search
MLQGRDLMVAAQTGTGKTGGFALPILERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQ
VHESFKVYARDLKFVSACIFGGVGMNPQVQAMSRGVDVLVACPGRLLDLAGQGSVDLSHV
EILVLDEADRMLDMGFVHDVKKVLARLPSKRQNLLFSATFSKDITDLAGKLLHNPERIEV
TPPNTTVERIEQRVFRLPANHKRSLLAHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGL
SAVAIHGNKSQNARTKALADFKAGEVRILVATDIAARGLDIDQLPHVVNFELPNVDEDYV
HRIGRTGRAGRSGEAISLVAPDEEKLLKSIERMTKQKIADGNLMGFDSSAVEAEKPEVRE
RPDVRNPRNPRGPRGDGPNGTGGGGGRKDKGKDKGGKEKAPATGRGDRPAREHKPREGTP
AREQQRPAPRAAVDRAPDEFLDDDVDNFGNRVDYVPQAKPAQGRGRRPGAPAPGAAAGAG
APRTGGKPQGRQSGPRSSDGATTGTPPAKRSGPRNGAPRDGQARREESRNRRPARTDDQP
RSEPAVQNPRGPAPKIIHKESKTDRFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
gtgttgcaaggtcgcgacctgatggtcgcggctcagacaggtactggtaaaaccggcggc
ttcgcccttccgattctggagcggttgttccccaacggtcacccggacaaatcccagcgt
cacggcccgcgccaaccgcgcgtactggtcctgacccctacccgcgaactcgcggctcaa
gtacacgagagcttcaaggtttatgcccgtgacctgaagttcgtcagcgcctgcatcttc
ggcggcgtcggcatgaacccgcaggttcaggccatgtcccgtggtgtcgacgtgctggtg
gcctgccctggccgcctgctcgacctcgccggccaaggcagcgtcgatctgtcccacgtg
gaaatcctcgtgctggacgaagccgaccgcatgctcgacatgggctttgtccatgacgtg
aagaaggtcctggctcgcctgccgagcaaacgtcagaacctgctgttctcggcgaccttc
tccaaagacatcaccgaccttgccggcaagctgctgcacaacccggaacgcatcgaagtc
acgccgccgaacaccacggtcgagcgtatcgagcaacgcgtcttccgcctgccagccaac
cacaagcgttcgctgttggcgcacctgatcaccgctggcgcctgggaacaggtcctggtg
ttcacccgcaccaagcacggcgccaaccgtctggccgagtacctggacaaacacggcctc
agcgccgtcgcgatccacggcaacaagagccagaacgcccgcaccaaagccctggccgac
ttcaaggccggtgaagtgcgcattctggtcgccaccgacatcgccgctcgcggcctcgac
atcgaccagttgccacacgtggttaacttcgagctgccgaacgtcgacgaagattacgtt
caccgtatcggccgtaccggccgtgccggtcgttcgggcgaggcgatctcgctggtcgcc
ccggacgaagaaaagctgctgaaaagcatcgagcgcatgaccaagcagaagattgccgat
ggcaacctgatgggcttcgactccagcgctgtagaagccgagaaaccggaagttcgcgag
cgtccggatgtgcgtaacccacgcaacccacgtggcccgcgcggcgacggcccgaacggc
accggcggtggcggcggtcgtaaagacaagggcaaggacaagggcggcaaggaaaaagcg
cctgccactggccgtggcgatcgcccggcccgtgaacacaagccacgcgaaggcaccccg
gctcgcgagcaacagcgtccggctcctcgtgccgccgttgatcgtgctccggatgagttc
ctggacgacgatgtggataacttcggtaaccgcgttgactacgtgcctcaagccaaaccg
gctcagggccgtggccgccgtccgggtgctccggcaccaggcgcggcagccggcgcaggt
gctccacgcaccggcggcaagcctcagggtcgccaaagcggtccgcgcagcagcgacggc
gccaccaccggcacgccgccggccaagcgcagtggcccacgtaacggcgctccacgtgac
ggccaggcccgtcgtgaagagtcgcgcaaccgtcgtccggctcgcaccgacgaccagccg
cgttcggaaccggccgtgcaaaacccgcgcggcccggcaccgaagatcattcacaaggag
tcgaaaaccgatcgtttcccgactccagagcaacttgatcaactgccaggccgtccacgc
ggtgagaagccagcgttgctgacccgcaatcgctga
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