Pseudomonas mandelii: OU5_4091
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Entry
OU5_4091 CDS
T03626
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pman
Pseudomonas mandelii
Pathway
pman03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pman00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OU5_4091 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pman03021
]
OU5_4091 (rpoC)
03400 DNA repair and recombination proteins [BR:
pman03400
]
OU5_4091 (rpoC)
Enzymes [BR:
pman01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OU5_4091 (rpoC)
Transcription machinery [BR:
pman03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OU5_4091 (rpoC)
DNA repair and recombination proteins [BR:
pman03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OU5_4091 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
DUF3150
Motif
Other DBs
NCBI-ProteinID:
AHZ71170
UniProt:
A0A024EF21
LinkDB
All DBs
Position
4605985..4610184
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKVKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPPGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGAATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEHGLVMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL
HNLKHVERVDGCLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM
VDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTHVLVENERLAGDEKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtattggattggcatcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgaacgtgacggcctgttctgcgccaag
atctttggcccggtaaaggattacgagtgcctgtgcggtaagtacaagcgcttgaagcac
cgtggcgtgatctgcgagaagtgcggcgttgaagtcgcgctggctaaagttcgtcgtgag
cgcatggcgcacatcgaactggcctcgccagttgcccacatctggttcttgaaatcgctg
ccgtcgcgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctat
ttcgagagctatgtcgttatcgatccaggcatgaccacccttgaaaaaggtcagctgctc
aacgacgagcagtacttcgaagcgctggaagagttcggcgacgatttcgatgcccgcatg
ggtgccgaagctgtccgtgaactgctgcacgctatcgacctggaacacgagattggccgt
ctgcgcgaagaaattccgcaaaccaactccgaaaccaaaatcaaaaagctgtccaagcgt
ctgaagttgatggaagccttccagggttccggcaaccttccagaatggatggtgctgacc
gttctgccggttctgccgccagatctgcgtccactggtcccgctggatggcggtcgcttc
gcgacttccgacctcaacgatctgtatcgtcgagtgatcaaccgtaacaaccgcttgaag
cgtctgctcgatctgtccgctccggacatcatcgtgcgcaacgaaaagcgtatgttgcag
gaagctgtcgatgcactgctcgacaacggtcgtcgtggccgcgctatcaccggttcgaac
aagcgtcctctgaaatccctggctgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggtcgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaaaatggccctcgagctgttcaagccgttc
atcttcggcaagctggaaatgcgtggtctcgctaccaccatcaaagctgccaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgctgaagtgatccgtgaacacccg
gttctcctcaaccgtgcaccgacccttcaccgtcttggtatccaggcgtttgaaccggta
ctgatcgaaggtaaggctatccagctgcaccctctggtctgtgctgcgtacaacgccgac
ttcgacggcgaccaaatggccgtgcacgtaccgctgacactggaagcccagttggaagcg
cgtgcgttgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtattgggtctgtactacatgactcgtgaagcgatcaacgcc
aaaggcgaaggtcgtgtgttcgcggatctgcaagaagttgaccgtgtgttccgtgccggc
gaagccgcgctgcacgccaaggtcaaagtgcggatcaacgaaaccgtcaacgatcgtgat
ggtggcagcgtcaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgttgttc
caggttgttccacctggcctgtcatacgacgtcgtcaaccagccgatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtttgaaagagaccgtgatcttc
gctgaccagttgatgtacaccggttttgcttattcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtgctgctaccgacgaa
gtgaaagagatcgaaagtcagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtgatcgacctttggtccaaggcgaacgacgaagtttccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgtcatggcgtcgaagtcgaccaagagtccttcaac
tcgatgtacatgatggccgactcgggcgcacggggttctgctgcgcagatccgtcagctc
gccggtatgcgtggcctgatggccaagccggacggttccatcatcgaaacgccgattact
gcgaacttccgtgaaggtttgagcgtacttcagtacttcatctccactcacggtgctcgt
aaaggtttggcggataccgcgttgaaaactgcgaactccggttacctgactcgtcgtctg
gtagacgtggcgcaggatctggttgtgaccgagatcgattgcggcaccgaacatggcctg
gtaatgactccgcacattgaaggcggtgacgttgtcgagccgttgggtgagcgcgtattg
ggtcgtgtcattgctcgtgacgtgttcaagccaggtaccgaagaaatcatcgttcctgcc
ggcacgctggtagacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccgatcagctgcgaaacccgctatggcatttgcgccaagtgctacggc
cgtgacttggctcgtggtcaccaggtgaacatcggtgaagcggtcggcgttatcgctgcc
cagtccatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgcg
gcaagccggacctccgcagctgatagcgttcaggtgaagaatggcggtaccgtccgtctg
cataacctgaaacacgttgagcgagtggatggttgcctggttgctgtgtcccgttccggt
gagctggcgatcgctgatgacttcggtcgtgagcgcgagcgttacaagctgccgtacggt
gctgtgatttcggttaaagaaggtgacaaggtcgacgctggcgcaatcgtggccaagtgg
gatccgcacactcacccaatcgttaccgaaatgaaaggtaccgtgacctacgtgggcatg
gaagaaggcatcacgatcaagcgtcagactgacgaattgaccggtatgaccaacattgaa
gtactcgacgccaaagaccgtccagctgccggtaaagatatccgtcctgctgtgaagatg
gttgatgacaatggcaaggatctcttgctgccgggtaccgacgtaattgctcagtacttc
ctgcctgctaacgccctggtcggtgtagcggacggcgcgaaaatcgcgatcggtgatgtt
atcgctcgtattccgcaagagacttcgaaaacccgtgacatcaccggtggtctgccgcgt
gttgccgacttgttcgaagcccgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgcgttcggtaaagagaccaaaggcaagcgccgtctggtcattaccccgaac
gacggtagcgatccgtatgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccaagcgatccacacgacatc
ctgcgtctgctgggtgtgagtgcgctggccaagtacatcgtgaacgagatccaggacgtt
tatcgtctgcaaggcgtgaagatcaacgataagcacatcgagaccatcctgcgtcagatg
ctgcgtaaagttgaaatcgctgaatccggcgattccagtttcatcaagggcgaccagatg
gaattgactcacgttctggtagagaacgagcgtctggctggcgacgagaaattcgtttcc
aagttcactcgcgtgctgctgggtatcaccaaggcgtcgttgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccactcgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtagtcgtgggtcgtctgatcccggccggt
accggtctggcttatcacagcgagcgcaagcgccgccgtgatgctgacaaaccgttgcgc
gttagcgccagtgaagtggaagctgcactgaccgaagcactgaactcgagcggtaactga
DBGET
integrated database retrieval system
