Pseudomonas marincola: PMYSY11_0084
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Entry
PMYSY11_0084 CDS
T07318
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PMYSY11_0084 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_0084 (recB)
Enzymes [BR:
pmao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PMYSY11_0084 (recB)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMYSY11_0084 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
ResIII
AAA_11
Terminase_6N
Helicase_RecD
DUF87
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CAE6881340
LinkDB
All DBs
Position
PMYSY11:91481..95050
Genome browser
AA seq
1189 aa
AA seq
DB search
MSSQPLNLLHDSFSGRSLIEASAGTGKTWTLTALFARLLLEKQLTVSQILVVTYTTAATA
ELRERIRKRLAELLEVYNSGPGNDALLNELYAQYPDPASHRRLLLAVHGFDEAAIFTIHG
FCQRALQDAAFEAGGDFDNELTQDDREILDALLADLWRHELAAAEPEWAAFLVQKKITPQ
SLRQRLRNHLGKPYIRVEPQPGEPGDMADLQCAWQHARDFWQRQSAGWIAELSAFSGFNK
RSYDAAKFALWQVELDGYFCDPAALFSKVDGLKRLSREALIKGTNKGFEPPLEAVADALQ
GLCDALDAAQPEAEMRLIDLQVRLIAQLNEQLPARKAAQRMLAFDDLLNRLQQALYGEGG
EHLARTLREQYPVALIDEFQDTDPIQYQIFSTIYAADAPASSSTESADLCFVGDPKQAIY
AFRGADLATYMQARSEADREYNLGTNHRSTAQLIDALNLLFARARPFAEHDLSYPPVAAS
TRSREQLVLTGQDEAAVGLVWLGDEPLGKGEAGGLVATDTARRIAGLLAASARGEAYFEQ
EGQRRPLAGADIAVLVSSHRQASEVASELTARGVPSVRRGKESVWHSEEATALAAVLAAY
IEPGREGALRFALATRLLGRNARDLAATQDDARAWDEEREAAERYHQLWQQQGFMRAFRA
WLDEQQVAQRLLAMDDGERRLTNLLHLAELLQTESLSRPGQEQLLSWFNAQREVDNHGED
ALLRLESDAERVQIVTIHTSKGLEYPLVFCPYLWDGALLRKQEDITCHADDGTPLLDLGG
EQLDHHRERARRERFAERLRLVYVALTRARDRLWLHWGPVDSKPKKDGTLSEEGLHSSAM
AWLLHGRDLAGEDALSELAEHMRTLSAQGLLAELEQLVSSSNGQFSVLALAQDETHSAGE
QRAPAPEQLAHLPRSLHSAWRIGSFSGLAAGMHMEAPDRDGLVIPDASEPGSGFYAFPRG
ARAGTCLHAILEDWAMNKAPLADLVEPALAGHGIDTDWTAVAQAHLQLVVDTDLDGNGLT
LATLQAARRLPELGFTFPVGGLDVQRLRKILCDPAYGLDEPMRDAASRLEFDSLKGFLKG
FIDLTFEYQGRWYIADYKSNWLGPDASYYGGERLIQALAAEHYYLQYLIYLVALRRFLRQ
RLSDFEDQQLGGAYYLFLRGMPGAGVYFARPSDALLDALDQLFAGEAGV
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccagccactgaacttattgcacgactccttcagcggtcgctcactcatcgaa
gccagtgccggcaccggcaaaacctggactctcacagcgctgttcgcccgcttgctgctg
gaaaagcaactgaccgtttcgcagattctggtggtgacttacaccaccgccgccacggct
gaattgcgcgagcgcatccgcaaacgcctcgctgaattgcttgaggtatataacagcggc
cccggcaacgatgcgttgctcaacgagttgtatgcgcaatacccggacccggccagccac
cggcgcttgttgctggcggtgcacggttttgatgaagcggcgatcttcaccattcacggt
ttctgtcagcgcgcgttgcaagatgcagccttcgaggcgggcggcgattttgataacgag
ctgacgcaggatgaccgcgagattcttgatgcactgctggcggacttgtggcgccatgaa
ctggctgctgccgagcccgagtgggcggcgtttctggtacagaaaaagatcaccccgcag
agtttacgccagcgtttgcgcaatcatttgggcaagccttacatacgcgttgagccgcag
ccgggcgagccgggcgatatggccgatctgcaatgtgcctggcagcatgcacgggatttc
tggcagcgtcagagcgccggctggatcgccgagctaagcgcattcagcggcttcaataag
cgcagctacgatgctgccaagtttgccctgtggcaggtcgagctggacggctacttctgt
gatccggcggcgctgttcagtaaggtcgacgggctcaagcgcttatcccgcgaagcactg
atcaaaggcaccaacaagggttttgaaccgccgcttgaggccgtggccgatgcgctgcaa
ggtttatgtgatgcacttgatgccgcgcagcccgaagcagagatgcgcctgattgacctg
caagtgcggcttatcgcccagctcaatgagcaactaccggcgcgtaaggcggcgcagcgc
atgctggcatttgacgacctgctcaatcgtttgcagcaggcgctctatggcgaaggcggc
gagcatctggccagaaccttgcgcgaacaatatccggtggccctgatcgacgaatttcag
gacaccgacccgattcagtatcagattttcagcaccatttatgccgccgatgcgcctgcg
tcgagcagcactgagtccgctgatctgtgttttgtcggcgaccccaaacaagcgatctat
gcctttcgcggggccgatctggcgacctacatgcaggcgcgcagcgaagcggatcgtgaa
tacaacctgggcaccaatcaccgctccacggcgcaattgatcgacgccttgaacctgctg
tttgcccgcgcgcggccatttgccgaacacgacctgagttatccaccggtcgcggccagc
acccgctcgcgtgaacaactggtgctgaccgggcaggatgaggcggccgtcgggctggtc
tggctgggtgatgagccgctgggcaagggtgaggcgggtggtttggtcgccaccgacacc
gcgcggagaattgccggattgctggcggcgagcgcgcgtggcgaggcttacttcgagcag
gaaggccagcgcaggcctttggctggtgccgatattgcggtgttggtgtcgagccatcgt
caggccagtgaagtggccagcgagctgaccgcgcgcggtgtgccgagtgtgcgtcgtggc
aaggaaagcgtgtggcacagcgaagaggccacggcattggccgccgttctggcggcctat
atcgaaccgggccgcgaaggcgcgctgcgctttgccctggccactcgcttgctcggccgt
aatgcccgcgatcttgcggcaacccaggacgatgcccgcgcgtgggatgaagaacgcgag
gctgccgagcgctaccaccaactctggcagcagcagggtttcatgcgcgcgtttcgcgcg
tggctggatgagcaacaggtggcccagcgcttgctggcgatggatgacggcgaacggcgg
ctgaccaatctgctgcatctggccgaactgctgcaaaccgagagcctgagccgtcccggt
caggagcaattgctcagctggttcaatgcccagcgcgaagtggataaccacggcgaagat
gccttgttgcggctggaaagcgatgccgagcgggtgcagatcgtcaccatccatacctcc
aaagggcttgagtacccgttggtgttttgcccgtatttatgggacggcgcgttgctgcgt
aaacaggaagacatcacctgtcacgccgatgacggcacgccgctgctcgaccttggcggc
gaacagctcgatcaccaccgcgaacgtgcccgtcgtgagcgtttcgctgaacggctgcgt
ctggtttatgtggcgcttacccgcgcgcgcgaccgtttgtggctgcattgggggccggtt
gacagcaagccgaaaaaggacggcacgctgagtgaagagggcctgcacagcagcgcgatg
gcgtggctactgcacggtcgtgacttggcgggcgaggatgcgctgagtgagctggccgag
cacatgcgcaccttgtctgcccagggtttgctggcagagctggagcaactggtgagtagc
agtaacggccagttcagcgtgctcgcgctggcgcaggatgaaacgcacagcgccggtgag
caacgcgctccggcccccgagcaactggcgcatttgccgcgttccttgcacagcgcctgg
cgaattggcagcttctccggtttggcggcaggcatgcacatggaagcgccggaccgcgat
ggattggtgattcccgatgccagcgaacccggcagcggtttctacgccttcccgcgaggc
gcgcgcgccggtacttgcttgcacgcgattctcgaagactgggccatgaacaaggcgccg
ctggctgacttggtcgaaccagcgctggcaggccacggtattgatactgactggactgcc
gtggcgcaggcgcatttgcagttagtggtggacactgatctggacggcaacggcctgacg
ctggcaacgctgcaagccgcgcgccgcttgcctgagttgggctttaccttcccggttggc
gggctggatgtgcagcgcctgcgcaagattctctgtgacccggcgtatggtctggacgag
ccgatgcgcgacgccgcttcacgtttggaattcgacagcctcaagggctttctcaaaggt
tttatcgacctgactttcgagtatcaggggcgctggtatatcgccgactacaaatccaac
tggcttgggccagatgccagttactacggtggcgagcgccttattcaggcgctcgcggca
gagcattactatctgcagtacctgatttatctggtcgccttgcggcgcttcctgcgccag
cgcctgagtgattttgaggatcaacaactgggcggcgcgtattacctgttcctgcgcggt
atgccgggcgcaggggtgtattttgcgcggcccagtgacgcgttgctggatgcattggat
cagttatttgcgggtgaggcaggcgtatga
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