Pseudomonas marincola: PMYSY11_0085
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Entry
PMYSY11_0085 CDS
T07318
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit RecD
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PMYSY11_0085 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_0085 (recD)
Enzymes [BR:
pmao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
PMYSY11_0085 (recD)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMYSY11_0085 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
UvrD_C_2
Viral_helicase1
AAA_11
SH3_13
Helicase_RecD
UvrD-helicase
AAA_22
SLFN-g3_helicase
UvrD_C
AAA_16
nSTAND3
AAA_28
DEAD
Terminase_6N
CbiA
T2SSE
MukB
AAA_24
DO-GTPase1
Motif
Other DBs
NCBI-ProteinID:
CAE6881366
LinkDB
All DBs
Position
PMYSY11:95047..96885
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AA seq
612 aa
AA seq
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MTLDKIDLGPLERALVNSLQRLDPDASPVLLACAALLCSALEKGDVCLPLRRIAGLRPWA
DQPFSLPGLHELLDALNASQLVGPAGSFTPLIMVGERLYLARYQAYEQQLAEQLLARCSD
IPPVDEAVLSASLTRLFAFNSQQPDWQRLAAAQAVRRKLAVISGGPGTGKTTTVVRLLAA
LLEQPDSGHLAIGLAAPTGKAAARMAEAIRNAKAQLPVSDAVKAALPEEARTLHRLLGSR
GDSPQVRHNAANPLPLDVLVVDEASMVDLALMAKLVDALAPSARLILLGDKDQLAAVEAG
AVFAELCEGRGFNAQAAADLQRITGQQVAVEQPRSKLGDAVVLLTHSHRFAGDSGIGELA
RRINGGDVPGTLKVLREGREDLAWIETPTPNDLLVRLEQGYAGFLQAAKSVDPAAAFAAF
NTFRALTAQREGPWGVSGINEALEARFKRRLQVASRERWYAGRAVMVRQNDYALGLFNGD
IGICLMTEHGLRVVFEAEQGFRPFAPARLPSHDSAFAMTVHKSQGSEFNQVLLALPEQPS
PLLTRSLFYTGITRAKNKVEIWGLPVRLAEAVSTRAERAAGLAERLQNGVQAPAAPVQTP
AATPAGNQLDLF
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgactctcgacaagatcgatctcggcccgctggagcgcgcactggtcaacagcctgcag
cgccttgatccggatgccagcccagtcctgctggcctgcgccgcattgctgtgcagtgcg
ctggaaaaaggcgatgtgtgcctgccgctgcggcgtatcgccggactgcgaccctgggct
gatcagccgttcagcctgccggggctgcacgaattactagacgcgctgaacgcatcgcag
ctggtgggcccggcgggttcgttcacgccgctgattatggttggcgagcggctgtatctg
gcgcggtatcaggcctacgagcaacagttggcggagcagttgctggcgcgttgcagtgat
attccgccggtggatgaagccgttctcagtgctagcctgacccgcctgtttgcgtttaac
agccagcagccggactggcagcgtttagcggcggcgcaagcggtgcggcgcaagttggcg
gttatttccggcggccccggcacgggcaaaaccaccacggtggtgcgcttgctcgcggct
ttgttggagcaacctgattccgggcatctggctatcggtttggcagcgccgacaggcaag
gcggcggcacgcatggccgaagccattcgcaacgccaaggcgcaattgccggtgagtgat
gcggttaaagcggcgctgccggaagaggcgcgtacgttgcaccgtttactcggcagccgg
ggtgacagtccgcaggttcggcataacgccgccaatccgttaccgctggatgtgttggtg
gtggacgaagcgtcgatggtcgatctggcgctgatggccaaactggtggatgcgctggcg
cccagtgcgcggttgattctgctgggtgacaaggaccagttggcggctgtggaagcgggt
gcagtgtttgccgagctttgcgaggggcgcggttttaatgcccaggcagcggccgacttg
cagcgtattaccggccagcaggtggcagttgaacagccgcgctcaaagctcggggatgcg
gtggttctgcttactcacagccatcgctttgccggtgacagcggtattggcgaactggcc
cggcggatcaatggcggcgatgtgcccggcactttgaaagtgctcagggaaggacgcgag
gatttagcctggattgagacgccgacgcctaatgatctgctggtgcggttggagcaaggt
tatgcgggctttttgcaggcggctaaaagcgttgatccagcggcagcctttgcggcgttc
aatacctttcgggcgctgacggcgcagcgcgagggcccgtggggcgtctccgggatcaac
gaggcactggaagcgcgctttaaacggcgtctgcaggttgccagccgtgagcgctggtac
gccgggcgggcggtgatggtgcgccagaatgactacgcgctgggattgttcaacggcgat
atcggcatttgcctcatgaccgagcacgggctgcgcgtggtgttcgaggccgagcagggt
ttccgcccgtttgccccggcacgattgcccagccatgacagtgccttcgccatgacggtg
cacaagagccagggctccgagtttaatcaggtgttgctggcgctgcccgaacagccgagc
cctttgctcacccgcagcctgttctataccggcattacccgggccaagaacaaggtggag
atctgggggctgccggtgcgtctggccgaggcggtaagtactcgcgccgaacgtgcggcg
gggctggccgagcgcctgcagaacggcgtgcaagcgccggctgcgccggtgcaaaccccc
gctgcaacgcccgccggcaatcaactcgatctgttctga
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