Pseudomonas marincola: PMYSY11_0695
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Entry
PMYSY11_0695 CDS
T07318
Symbol
rpoB
Name
(GenBank) RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PMYSY11_0695 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmao03021
]
PMYSY11_0695 (rpoB)
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_0695 (rpoB)
Enzymes [BR:
pmao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PMYSY11_0695 (rpoB)
Transcription machinery [BR:
pmao03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PMYSY11_0695 (rpoB)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PMYSY11_0695 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
Motif
Other DBs
NCBI-ProteinID:
CAE6891757
LinkDB
All DBs
Position
PMYSY11:753891..757964
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDIGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTFAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARV
IPYRGSWLDFEFDPKDAVFVRIDRRRKLPASVLLRALGYTTEEVLDAFYTTNVFHVTGES
LRLELVPERLRGEIAVLDIADDKGKVIVEQGRRITARHINQLNKAGITELNVPIDYLLGR
TSAKAIVHPATGEILVECNTELSVEDLAKVVKAQVVRIETLYTNDIDCGPFISDTLKIDS
TTNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLNKEDIVEVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DTLVTDEIVFLSAIEEADHVIAQASATMNDKGQLVDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRSDKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVNDDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
QVARSDILADGPSTDMGELALGQNMRVAFMPWNGYNFEDSILLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEISSDIPNVGEAALNKLDEAGIVYVGAEVGPGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDSRALAIEKMQLDE
IRKDLNEEFRIVEGATFERLRSALVGKVVEGGAGLKKGAEITDEFLDGLERGQWFKLRMA
DDALNEQLEKAQAYISDRRQLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDIHGTPVDIVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINLMLEEQRKVAELRQFMQQIYNEIGGRQESLDDLSDTEILNLAKNLRGGVPMATP
VFDGAKEVEIKAMLKLADLPESGQMRLIDGRTGNQFERPTTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALESYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggat
gtcatggatgtgccttatctcctggccatccagctggattcgtatcgcgaattcctgcag
gcgggagcgaccaaagatcagtttcgcgatattggcttgcatgcagccttcaaatccgtt
ttcccgattatcagctattccggcaatgctgctctggaatatgtcggttatcgcctgggc
gaaccggcctttgacgtcaaagagtgcgtacttcgtggcgtaacctttgccgtaccgctg
cgggtaaaagtccgtctgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
attaaagagcaagaagtttacatgggggaaatccccctgatgactgagaacggtaccttc
gtaatcaacggtaccgagcgcgtcatcgtctcccagttgcaccgttcgccgggcgtgttc
ttcgatcacgaccgtggcaagacgcacagctctggcaaactgctgtattcagctcgcgta
attccttaccgtggctcgtggctcgacttcgaattcgacccgaaagacgccgtgttcgta
cgtatcgaccgtcgccgcaaattgccggcttccgtgctgctgcgtgcactgggttacacc
actgaagaagtgctggacgctttctataccaccaacgttttccacgtcaccggcgaaagc
ctgcgtctggaactggtgccagagcgtctgcgcggtgaaattgctgtactggatattgct
gacgacaagggcaaagtcattgtcgagcaaggccgccgtattactgcgcgccacatcaac
cagttgaacaaagccggtatcaccgagctcaacgtgcctatcgattacctgcttggccgt
acttctgccaaggcaatcgtgcacccggcaactggcgagatcctggttgaatgcaacact
gagctgagcgttgaagacctggccaaggtcgtcaaggcgcaggttgtgcgcattgaaacc
ctgtacaccaacgatatcgattgcggtccgttcatctccgataccctgaagatcgactcg
accaccaatcagctcgaagcgctggttgaaatctatcgcatgatgcgtccaggcgagccg
ccaaccaaggatgctgccgagactctgttcaacaacctgttcttcagcccagagcgttat
gatctgtcggctgttggccggatgaagttcaaccgtcgtatcggtcgcaccgagatcgaa
ggttctggcgtactcaacaaagaagacatcgtcgaggttctgaagaccctcgtggatatc
cgcaacggcaaaggcatcgtcgatgacatcgaccacctgggtaaccgtcgcgtgcgttgt
gtcggcgaaatggccgagaaccagttccgtgtaggtctggtacgtgttgagcgtgcggtt
aaagaacgtctttcgatggctgaaagcgaaggcttgatgccgcaggacctgatcaacgcc
aagccagtggctgctgcggtcaaagagttcttcggttccagccagctatcgcagttcatg
gaccagaacaacccgctgtccgagatcacccacaagcgccgcgtttcggctcttggcccg
ggcggtctgacacgtgagcgtgcaggcttcgaagtccgtgacgtacacccgactcactac
ggtcgtgtatgcccgattgaaacgccggaaggtccgaacattggtctgatcaactccctg
gcggcctatgcgcgtaccaaccagtacggcttccttgagagcccgtaccgtgtggttaaa
gacacattggttactgatgagatcgtgttcctgtctgcgatcgaagaagcagaccacgtg
atcgctcaggcatcggcaacgatgaacgacaaaggtcagctggttgatgagttggtggcg
gtacgtcacctcaacgaattcaccgtaaaagcgcctgaagacgtgaccctgatggacgtt
tcgccgaagcaggtagtttcggttgcagcctccctcatcccgttcctcgagcacgacgat
gctaaccgggccctgatgggttcgaacatgcagcgtcaggctgttccgaccctgcgttcg
gacaagccgctggtaggtactggtatggagcgcaacgtagcgcgcgactccggtgtttgc
gttgttgcacgtcgtggcggtgtgatcgactcggtcgacgccagccgtatcgttgttcgt
gttaacgatgacgaagttgaaactggcgaagccggtgtcgacatttacaacctgaccaaa
tacacccgttctaaccagaacacctgcatcaaccagcgtccgctggtgagcaaaggtgat
caggtagcacgcagcgacattctcgctgacggcccgtcgaccgacatgggtgaactggct
ttgggccagaacatgcgcgtcgcgttcatgccgtggaacggttacaacttcgaagactcc
atcctcctttccgagcgtgtagtacaagaagaccgcttcaccacgatccacatccaggaa
ctgacctgtgtggcccgtgacaccaagcttgggcctgaggaaatctcctcggacatcccg
aacgtgggtgaagctgcactgaacaagctggacgaagcaggcatcgtgtatgtcggcgct
gaagttggcccgggcgacattctggttggtaaggtaacgccgaaaggtgagacccagctg
acgccggaagagaagctgttgcgtgcgatcttcggtgagaaggcatctgacgttaaagat
acttccctgcgtgtgccgactggcaccaaaggtacagtcatcgacgtacaggtcttcacc
cgtgatggtgtagagcgcgattcgcgtgccctggctatcgagaagatgcaactggacgag
atccgtaaggaccttaacgaagagttccgcatcgttgaaggcgcaaccttcgaacgtctg
cgttctgctctcgtgggtaaagttgttgaaggcggtgctggcctgaagaaaggcgccgaa
atcactgacgaattcctcgacggtcttgagcgtggccagtggttcaagctgcgcatggct
gacgatgcactgaacgagcagttggaaaaggctcaggcctacatctctgatcgccgtcag
ttgctcgacgacaagttcgaagacaagaagcgcaagctgcagcagggcgatgacctggct
ccgggcgttctgaagatcgttaaggtttacctggcaatccgccgtcgcatccagccgggt
gacaagatggccggtcgtcacggtaacaagggtgttgtctcggtgatcatgccggttgaa
gacatgcctcacgatattcacggtacgccggtagacatcgtgttgaacccgctgggtgta
ccttcgcgtatgaacgtgggtcagatcctcgaaactcacctgggcctcgcggctaaaggt
ttgggcgagaagatcaacctgatgctcgaagagcagcgcaaagtcgctgaactgcgtcaa
ttcatgcagcagatctacaacgagatcggcggccgtcaggaaagtctggatgatcttagc
gacacggaaatcctcaacctggcgaagaacttgcgcggcggcgtgccaatggctactccg
gtgttcgacggtgctaaagaagttgaaatcaaggccatgctgaaactggcagacctgcca
gaaagcggccagatgcgactgatcgatggccgtaccggtaatcagttcgagcgtccaact
accgttggctacatgtacatgctcaagctgaaccacttggttgacgacaagatgcacgcg
cgttctaccggttcttacagcctggttactcagcagccgctgggtggtaaggcgcaattc
ggtggccagcgcttcggtgagatggaggtgtgggcactcgagtcgtatggtgctgcttac
acgctgcaggaaatgctcactgtgaagtcggacgatgtgaacggccgtaccaagatgtac
aaaaacatcgtggacggtgatcaccgtatggagccaggcatgcctgagtccttcaacgta
ctgatcaaagagatccgttcgctcggtatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
