Pseudomonas marincola: PMYSY11_0978
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Entry
PMYSY11_0978 CDS
T07318
Symbol
sbcD
Name
(GenBank) ATP dependent, structure specific DNA nuclease -SbcD subunit
KO
K03547
DNA repair protein SbcD/Mre11
Organism
pmao
Pseudomonas marincola
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_0978 (sbcD)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMYSY11_0978 (sbcD)
Archaeal homologous recombinant proteins
PMYSY11_0978 (sbcD)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
FBPase_2
Motif
Other DBs
NCBI-ProteinID:
CAE6896671
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Position
PMYSY11:1025842..1027074
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AA seq
410 aa
AA seq
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MSKPLRILHTSDWHLGQHFMGKTRHAEHQQFCAWLIEQVQAHQVDAVLIAGDIFDTGAPP
SYAREQYSDFIVELRQTGCALVVLGGNHDSVAMLGENKRLLAQLGARVIPSVSDDLAEQV
LVLDHRDGTPGAVLCAIPFIRPRDVLLSQAGQSGADKQLQLQQAIAGHYQQLFELAEAKR
AELGLPLPIVATGHLTTVGASASESVREIYVGTLESFPTNAFPAVDYIALGHIHRPQKVA
GLEHIRYCGSPIALSFDEARQQKEVLLVDLDSSGLQQVSALAVPRTQVLLSLKGTLKELQ
ALITDAAQQGTDQQPVWLEIQVSADDYLSDLQVRIAALCEGLPVEVLRIRRERGAATTNL
FSDAKETLDELSPEQVFAQRLSTESLDKVDEVRLQELYREMLERLQNERG
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaagcccctgcggattctgcatacctcggactggcacctcggccagcacttcatg
ggcaagacccggcacgccgagcatcagcagttttgcgcctggctgatcgaacaagtgcaa
gcgcatcaagtcgatgctgtgctgatcgccggcgatatattcgacaccggcgcaccgccg
agttacgcccgcgagcaatacagcgacttcatcgtcgagttgcgccaaaccggctgcgcg
ctggtggtgctcggcggtaaccatgactcagtggccatgctcggtgaaaacaagcgcctg
ctcgcgcaactcggcgcgcgggtgatcccatctgtgagcgatgatttggccgagcaagtg
ctggtgcttgatcaccgcgatggcacgcccggtgcggtgctctgcgccattccgttcatt
cgcccgcgtgatgttctgcttagccaagcagggcagagcggcgctgataaacagttacag
ctgcaacaggccatcgccgggcattaccagcaactgttcgagttggccgaggccaagcgc
gctgagttgggtttgcccctgccaatagtcgccaccggccatctcaccacggttggcgcc
agcgccagcgagtccgtgcgcgagatctatgttggcactctggaatctttcccgaccaat
gccttccccgcagtcgattacatcgccctgggccacattcaccggccgcagaaagttgcc
ggtcttgaacacattcgctactgcggctcaccgattgcgctgagctttgatgaagcccgc
cagcaaaaagaagtcttgctggttgatctcgactcaagtggtctgcagcaggtcagtgca
ctcgctgtgccgcgcacgcaagtgctgttgtcactcaagggaaccctgaaagagctgcag
gcgttgatcacagatgccgcccagcaaggcacggatcagcagcccgtttggctggagatt
caagtcagcgcggatgattacctgagtgacctgcaagtgcgcatcgccgcattgtgcgaa
gggctgccggtcgaagtgctgcgcatccgccgcgagcgtggcgcagcgacgacaaatttg
ttcagcgacgccaaagaaaccctcgacgaactcagcccagaacaagtcttcgcacaacgg
ttgagtaccgagtcgctggataaagtggacgaggtgaggctgcaagagctttatcgtgaa
atgcttgagcgattgcagaatgagcgcgggtga
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