Pseudomonas marincola: PMYSY11_0980
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Entry
PMYSY11_0980 CDS
T07318
Symbol
sbcC
Name
(GenBank) ATP dependent, structure specific DNA nuclease -SbcC subunit
KO
K03546
DNA repair protein SbcC/Rad50
Organism
pmao
Pseudomonas marincola
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_0980 (sbcC)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PMYSY11_0980 (sbcC)
Archaeal homologous recombinant proteins
PMYSY11_0980 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
nSTAND3
cobW
ABC_tran
AAA_21
TsaE
AAA_22
NTPase_1
Motif
Other DBs
NCBI-ProteinID:
CAE6896705
LinkDB
All DBs
Position
PMYSY11:1027555..1030989
Genome browser
AA seq
1144 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKIDFTAEPFKDNGLFAITGPTGAGKTTLLDAICLALYHRTPR
MSTVSAGSNELMTRHTAECLAEVEFEVKGVGYRAFWSQRRARDKADGALQAPKVELAQMA
DGGIVTDKINEKLRETERLTGLDFERFTKSMLLAQGGFAAFLEANANQRAELLEELTGTD
IYGQISQRIFEQTREVKAALDQLRAKAEGFELLSDEQRQQLNAEVAQVTLDEQRIGAEQA
DLNTQAQWREAKAKAQAQLQQAQQQAGAAQSALSQAQPQLQQLAASEPASQLQPLYREQQ
RINRQLQGSQTQAQQLHDQHANVLQQICQQAWQGQQISEQALQAESAALQALQQRSEEVA
QRLAVQPQRAQLGAHLSAWEQQFGALQANQQEQATERDKQQQLDAQLAQLAVQLTQQQTA
LNSAQGQLKNAEQSAADAQAQWQALLAGQDDAALREQSQQLAERGRQLERLEMLLTQRQQ
WLDQHALAQSQLTSQQAEQVELNQQRETLRSQFVDLKQQIADKQKLLEQEQRIQQLEHYR
AALQPDEACPLCGSHEHPAIAEYQALNPSQTAQALQAKQTEQDAVRSKGEALNKRLGVVE
TQIAQAQAQIAAAEKGLGECDLRWQQACEILGQSLTDTAALQAAQHDHLQHVAQQQQRLT
QLDALKLAAQQTTDARLLAEREVSRCNAELEALVIRQGNLQLRQQDCAAQLQLLQNKHAQ
ALASLNDALQTLGYSLPDAPADWLRQQRAAWQRWQDDEAASQRLVIQQQEQKYALQLAQE
QAQNWQQRWLDQAQEPLAALAPVAQPHEELKQLQRSWQGAQQQADQIHGQLQTVRARIES
EQQEQQVLSKDWLAALAASPFADEAQFLGALLDDAERQNLRELQQRLSNDIAAALALESD
CNVRLAELQRTAPNGALAELSDDDLAQQLVQLNAQLRSLSERQGEIRAQLQGDDARRLSQ
KHLFEQIDAQQANYDVWQQLNSLIGSADGAKFRKFAQGLTLDHLVYLANQQLERLHGRYQ
LARKSQGELELEVVDTWQGDVARDTKTLSGGESFLVSLALALALSDLVSHKTSIDSLFLD
EGFGTLDGETLEIALDALDSLNASGKMIGVISHVEALKERIPVQLKVHKAIGMGYSGLDK
RFAV
NT seq
3435 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcctcagcctgcgcctcaagaatctcaactcgctgaagggcgagtggaagatc
gatttcactgccgagccattcaaagacaacggtttattcgcgattaccggcccgaccggt
gcgggtaaaaccacgttgctcgatgccatctgcctggcgttgtaccaccgtacgccgcgc
atgagtacggtgtcggcgggcagtaatgagttgatgacgcgccacaccgccgaatgtctg
gccgaggttgagttcgaggttaagggcgtgggttaccgggctttctggagccagcgccgc
gcccgcgataaagccgacggggcgttgcaggcgccgaaggtcgagctggcgcagatggca
gacggcggcattgtgaccgacaagatcaacgaaaaactgcgtgaaaccgagcgtctcacg
ggtctcgattttgagcgcttcaccaagtcgatgttgcttgctcagggcggttttgccgcc
tttcttgaggccaatgccaaccagcgtgccgagttgctcgaggagctgaccggcactgat
atttacgggcagatttcgcagcggatattcgagcaaacccgtgaagttaaagccgccctc
gatcagttgcgggccaaggctgaaggctttgaattgctcagtgacgagcagcgtcagcaa
ctcaatgccgaggttgcccaggttaccttggatgagcagcgcattggcgcagagcaggct
gacctcaacacgcaagcgcagtggcgtgaggccaaagccaaggcgcaggcgcagttgcag
caagcgcagcagcaagcaggcgcggcccagtcagcgttgagtcaggcgcagccgcagttg
cagcagttggcggcgagtgagcctgcgagccagttacagccgctgtaccgtgagcagcaa
cgcatcaaccgtcagttgcagggcagccagacgcaggcgcagcagttgcatgatcagcat
gccaatgtgctgcagcaaatctgccagcaggcgtggcaaggccagcaaatcagcgagcaa
gccttgcaggctgaatcggctgcattgcaggctttgcagcagcgcagcgaggaggttgct
cagcgtttggcggttcagccgcaacgggctcagcttggcgcgcatctttctgcgtgggaa
cagcagttcggggctttgcaggctaaccagcaggagcaggcaactgagcgtgacaagcag
caacagcttgatgcgcagctcgctcaactcgcggtgcaattaacccagcagcaaactgcg
ctgaatagcgcgcaaggccaactcaagaacgccgagcagtcagccgccgatgcgcaggcc
caatggcaggcgctgcttgccggacaggatgacgccgcgttgcgtgagcagtcgcagcaa
ctcgccgagcgcgggcgtcagcttgaacgtttggaaatgctgctgacacagcgtcaacaa
tggcttgatcagcacgccctggcgcaatcgcaactgacgtcgcaacaagccgaacaggtt
gagctcaatcagcagcgtgagaccttgcgcagccagtttgtcgacctcaagcagcagatc
gccgataagcaaaagttgctcgagcaagagcaacgtattcaacagttggagcattatcgc
gcggccctccagcctgacgaggcctgtccgctgtgtggctcgcacgagcacccggcgatt
gccgagtatcaggcgctcaatccgtcgcaaacggctcaggcgttacaggccaaacagacc
gaacaggatgccgtgcgcagcaagggcgaggcgctgaataaacgtctgggcgtggtggaa
acgcaaatcgctcaggctcaggcgcaaatcgctgcggccgagaagggtttgggcgagtgt
gatctgcgttggcaacaggcctgcgagattctcggccaatcactaactgacaccgctgcc
ttgcaagctgctcagcacgatcacctgcaacatgtggcgcagcaacaacaacgcctgacg
caactggacgcgttaaaactcgccgcccagcaaacgacagatgcccgcttgctggccgag
cgtgaagtgagtcgctgcaatgccgagcttgaggcgctggtgatcaggcaaggcaatctg
caattgcgccaacaagactgtgcggctcaattgcagctgctgcaaaacaagcacgcgcaa
gcgctggcgagtctgaacgacgccctgcaaacgctgggctacagccttcctgatgcgccg
gctgactggttgcgccagcagcgcgcggcgtggcaacgctggcaggacgatgaggcggca
agccagcgtttggttatccagcagcaagaacagaagtacgcgctacaactggcgcaagag
caggcgcagaactggcaacagcgttggctggatcaggcgcaggaaccgctcgctgctctg
gcgccggttgctcagccgcatgaggaactaaagcaattgcagcgcagctggcaaggcgcg
cagcaacaagccgaccaaatccacggccagctgcaaaccgtgcgggcgcgtatcgaaagc
gagcaacaggagcagcaagtcttgagtaaggattggctcgccgcgctggcggccagcccg
tttgctgacgaggcgcagtttctcggcgcattgcttgatgatgcagagcgccagaacctg
cgtgaattgcagcagcgtctgtcgaatgatattgcggcggcgctggcactagaaagcgat
tgcaacgtgcgtctcgccgagctgcaacgcactgcaccaaacggtgcgttggccgagttg
agtgatgatgatctggcgcagcagcttgtgcagctcaatgcgcaactgcgcagcctgagc
gagcgccaaggcgagattcgcgcgcaactgcaaggcgatgatgcgcggcgattgagccag
aagcacctgtttgagcagatcgacgcgcaacaagccaattacgacgtgtggcagcagctc
aacagcctgatcggttcggcggatggcgcaaaatttcgcaagttcgcccaaggtctgacg
ctcgatcatttggtctatttggccaatcagcagcttgagcgattgcatggccgctatcag
ctggcgcgcaagtctcagggtgagctggagcttgaagttgtggatacgtggcagggcgat
gtggcgcgcgacaccaaaacgctgtccggcggcgagagctttttggtcagtctggcgctg
gcattggcgttgtcggatctggtcagccacaagaccagcatcgattcgctatttctggat
gaaggctttggcaccctcgatggcgagacgctggagattgcgctggatgcgctggatagc
ctcaacgccagcggcaagatgatcggtgtaatcagccacgtcgaggcgctgaaagaacga
atccccgtgcagttgaaagtgcacaaagccatcggcatgggatacagcggtctggataag
cgattcgctgtttaa
DBGET
integrated database retrieval system
