Pseudomonas marincola: PMYSY11_1339
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Entry
PMYSY11_1339 CDS
T07318
Symbol
rapA
Name
(GenBank) RNA polymerase-binding ATPase and RNAP recycling factor
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
pmao
Pseudomonas marincola
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmao03021
]
PMYSY11_1339 (rapA)
Transcription machinery [BR:
pmao03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
PMYSY11_1339 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
Helicase_C
SNF2-rel_dom
ResIII
DEAD
Cas3-like_C_2
DUF4164
Motif
Other DBs
NCBI-ProteinID:
CAE6902712
LinkDB
All DBs
Position
PMYSY11:complement(1404163..1407006)
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AA seq
947 aa
AA seq
DB search
MAQFEPGQRWISDSEAELGLGTILMQEGRMLTVLFPATGETRQYAARNAPLTRVRFSPGD
EITHFEGWKLTVQEVDDIDGLLVYHGLNEQHQSITLPETQLSNFIQFRLASDRLFAGQID
PLAWFGLRYRTLEFTSKQLQSKLWGLGGVRAQPIAHQLHIAREVADRVAPRVLLADEVGL
GKTIEAGLVIHRQLLSGRASRILILVPENLQHQWLVEMRRRFNLDVALFDAERFIESDAS
NPFEDCQLALVALEWLREDEKAQDALFAAGWDLMVVDEAHHLVWHPEKSSPEYALVEQLA
EVIPGVLLLTATPEQLGQDSHFARLRLLDPHRFHDLEAFRAESANYRPVAEAVQELLDHG
QLSAGAHKTVHDFLGAEGEELLDAVNKGDAEASARLVRELLDRHGTGRLLFRNTRAAVQG
FTERELHPYPLPSPDEYLELPIGEHPDLYPEVSYQAQPEVEDEQRWWRIDPRVEWLIDTL
KMLKKFKVLVICAHAETAMDLEDALRVRSGIPATVFHEGMSILERDRAAAYFADEEFGAQ
VLICSEIGSEGRNFQFAHHLVLFDLPAHPDLLEQRIGRLDRIGQKHRIQLHVPYLENSPQ
ERLFQWYHEALNAFLATCPTGNALQHKFGSRMLPLLEGGDDGQWQELADECKAERLRLED
ELHAGRDRLLELNSGGAGEGEQLVEEILEQDDQFALPIYMEQLFNAFGIDSEDHSDNALI
LRPSEKMLDASFPLGSDEGVTITYDRDLALAREDMQFLTWEHPMVQGGMDLVRSGSMGNT
GVALIKNKALKPGTVLLELLYVSEVVAPRALQLGRYLPPAALRCLLDANGNDLASKVAFE
TLNDQLESVPRASANKFVQAQRDALNPQISVGEDKVSPRHLERVADAKHRLAADLDEELA
RLTALQAVNPSVRDSELETLRQIRSKGLAALDKAALRLEAIRVLVAG
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagtttgaaccggggcaacgctggattagtgacagcgaagcggagctgggcttg
ggaaccatcctcatgcaggaaggccgcatgctcactgtgctcttcccggcgacgggcgaa
acacgccaatacgcggcgcgcaatgcaccgctgacccgcgtgcgcttttctcctggtgac
gagatcactcatttcgaaggctggaaactgaccgtacaggaagtcgacgatatcgacggc
ctgctggtttatcacggcctcaatgagcagcatcagagcattacgctgccggagactcag
ctctccaacttcatccagttccgtcttgccagcgaccgcctgtttgccgggcagattgat
ccactggcctggttcggcctgcgttatcgcacgctcgaattcaccagcaaacaactgcag
tcgaaactgtggggcttgggcggcgtgcgtgcccaaccgatcgcgcaccagctgcacatc
gcccgcgaagtagccgaccgggttgcgccgcgcgtactgctggcagacgaagtgggtctg
ggtaaaaccatcgaagccggtctggttattcaccgccaactgctttcgggccgtgccagc
cgcatcctgattctggtgccggaaaacctccagcaccagtggctggtcgaaatgcgccgc
cgcttcaacctcgacgtcgccctgtttgacgccgaacgtttcatcgaaagcgatgccagc
aacccgtttgaagattgccagctggcgctggtcgcgctcgagtggctgcgtgaagacgag
aaagctcaagacgcattgttcgctgccggctgggatttgatggtcgtcgacgaggcccat
cacctggtttggcatccggaaaaaagcagcccggaatatgcgctggtcgaacagcttgcc
gaggttatcccaggcgtcctgctgctcaccgcaacgccagagcaattgggacaagacagc
cactttgcgcgcttgcgcctgctcgacccgcaccgtttccatgaccttgaagcgttccgc
gccgaaagcgccaactaccgcccggttgccgaagctgttcaagaactgctcgaccacggc
cagctctctgccggtgcgcataaaaccgtgcatgacttcctcggcgccgaaggcgaagag
ctgctggatgcggtgaacaagggtgacgccgaggcgtctgcgcgactggtgcgcgagctg
ctcgaccgccacggcaccggccgcctgcttttccgtaacacccgcgcggcggtacaaggc
ttcaccgagcgcgaactgcacccctacccgctgccgagcccggacgaatacctggagctg
ccaattggcgagcacccggatctttatcccgaggtcagctatcaggcccagcctgaggtt
gaggacgagcagcgctggtggcgcatcgacccacgcgtagagtggttgatcgacaccctg
aagatgctcaagaagttcaaggtgctggtgatttgtgcgcacgccgaaacggccatggat
ctcgaagacgccctgcgtgttcgctccggcatcccggcgactgtgttccatgaaggcatg
agcattcttgagcgcgaccgggcagcggcatactttgcggacgaagagtttggcgctcag
gtactgatctgttcggaaatcggcagcgaaggtcgcaacttccagtttgcccatcatttg
gtgctgttcgatctgccggctcacccggatctgcttgagcagcgcattggccgtctcgac
cgtattggccagaagcaccgcattcaactgcacgtgccgtatctggaaaacagcccgcaa
gagcgcctgttccagtggtatcacgaagcgctgaacgcgttcctcgcaacttgcccgacc
ggcaacgcgctgcagcataagttcggcagccgcatgctgccactgcttgaaggcggtgat
gacggccaatggcaagaactggctgacgaatgcaaagcagagcgtctgcgccttgaagat
gaactgcacgctggccgcgaccgcctgctggaactcaactcgggcggtgctggcgaaggc
gagcagctggtcgaggaaattctcgaacaggacgaccaattcgccctgccgatctacatg
gaacagttgttcaacgctttcggtatcgacagcgaagaccattccgacaatgccctgatc
ctgcgcccgagcgagaaaatgctcgatgccagcttcccgctgggcagcgacgaaggcgtg
accatcacttatgaccgcgacctggcattggcccgcgaagacatgcagttcctcacgtgg
gagcacccaatggttcaaggcggcatggatctggtgcgttcaggctcaatgggcaacacc
ggcgtcgcgctgatcaaaaacaaggccctcaagccaggtaccgttctgcttgagctgctt
tacgtcagtgaagtagtagcgccacgcgcactgcaattgggtcgctacttgccacccgct
gcattgcgttgcctgctcgacgccaatggcaatgatctggccagcaaggtggcgttcgaa
accctcaacgaccagctcgaaagcgtgccacgcgccagcgccaacaagtttgtgcaggcg
cagcgtgatgcgctcaacccgcagatcagtgtcggcgaagacaaggtttcaccgcgccat
ctggagcgtgttgccgacgctaaacatcgtctggcggctgatctcgatgaagagcttgcc
cgcttgaccgccctgcaggcagtcaacccgagtgtgcgcgacagcgaactggaaaccttg
cgccaaatccgcagcaaaggcctggcagcactggacaaggcagcgctgcgcctggaagcc
attcgggtgttggtcgcgggataa
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