Pseudomonas marincola: PMYSY11_1359
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Entry
PMYSY11_1359 CDS
T07318
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
pmao
Pseudomonas marincola
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmao03019
]
PMYSY11_1359 (hrpA)
Enzymes [BR:
pmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PMYSY11_1359 (hrpA)
Messenger RNA biogenesis [BR:
pmao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
PMYSY11_1359 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_25
nSTAND3
NACHT
nSTAND_NTPase5
ABC_tran
T2SSE
ResIII
AAA_23
SLFN-g3_helicase
SRP54
PhoH
Zeta_toxin
TsaE
Motif
Other DBs
NCBI-ProteinID:
CAE6903046
LinkDB
All DBs
Position
PMYSY11:1427688..1431662
Genome browser
AA seq
1324 aa
AA seq
DB search
MTDVTPTYDSLLKNLDQAMIADRHRLRRQLHELRKQPDEQKQAQWLERFQKSCAKVEARK
LSVPPMRYDDALPIAAKRDEIKQAISKHQVVVIAGETGSGKTTQLPKICLELGRGTHGLI
GHTQPRRLAARSVATRVAEEIGTPLGELVGYQVRFEDQSNERSLIKLMTDGILLAETQHD
RYLEKYDTIIVDEAHERSLNIDFLLGYLKTLLSRRPDLKLIITSATIDLQRFSKHFNDAP
IVEVSGRTYPVETWYRPLAAEQDEEGNQVEEDLSVDQALLASIDEIAAFERSEGKLPGDV
LVFLPGEREIREAADWLRKANLKHTEVLPLYARLTPAEQQKIFQPMPARKIVLATNVAET
SLTVPGIRYVIDSGTARISRYSYRAKVQRLPVEAISQASANQRKGRCGRVEPGICIRLYS
EEDFNSRPEFTDPEILRTNLAAVILQMLHLRLGEINQFPFIEPPDGKAISDGFNLLQELS
AVSREGQLTALGRQLARLPIDPRLGRMVLEGARLGSLDEVLIIASNLSVQDPRERPSDRQ
QAADQAHAQWKDVDSDFAALVNLWRGFEEQRQALGSSALRSWCRKNFLNYLRLREWRDAH
RQLVLISRDLQLNAKPAANKPAAAKAKAAEGEELSAAEKSVGYQTLHKAILAGLLSQIGQ
KTEDGDYLGARQRRFWIHPSSGIGRKRPQWLMASELVETTKLFARMVAKIEPDWIEPLAG
HLIKKNHFEPHWEKKRGQVVAYEQITLYGMIVVGRRPVHFGPIEPVVSRELFIREGLVGG
EINSRARCLSANRQLLEKLDELEAKARRRDILADEEAMFAFYDARIPADIYQTASFESWY
KRESAKNPQLLIMREEDVLARDAKEVTASLYPDTLQLGDLQLPMSYHFEPNHPRDGVTVR
VPAPLLPQLQPERLEWLVPGLLEAKCMALVRGLPKALRKNFVPVPDFVAAALSKITFGEG
SLPQSLGRELQRMTGARVPDEAWAESAGAVESHLRMNIEVVDTRGKLLGEGRDLAELTAR
FSEASQAALAIPQSKTADKPIEAKGFAEVAEKTQHQVAGLTMTVYPALVEEAGSVKEGRF
STAAEAEFQHRRALQRLLLQQLAEPAKFLRGKLPGLTELGLLYRELGRVDALVEDILLAS
LDSCMLEGQQPLPRDGAALAALASKRGDWVEHAERLARLVLEILKLYHSLQKRFKGKIDL
AQAIALNDIKQQLANLVYPGFVRETPAVWLKELPRYLRAIEQRLDKLGSQVQRDRVWSGE
LAQCWQQYSARLAKHLQEGKRDEQLLLYRWMLEEYRVSLFAQQLGTKIPVSDKRLSKQWN
NVEA
NT seq
3975 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgtcacaccgacttatgactcattactgaaaaaccttgatcaggcgatgatt
gccgacaggcatcgtttgcgccggcaattgcacgagttgcgcaagcagcccgatgagcag
aagcaggcccagtggcttgagcgttttcagaagtcgtgtgccaaggttgaggcacgcaag
ctcagcgtgccgccgatgcgttacgacgacgcgctgccgattgcagccaagcgcgacgag
atcaagcaggcaatcagtaaacaccaagtggtggtgattgccggcgaaaccggctcgggc
aagaccactcagctgccgaagatttgcctggaactggggcgcggcacgcatggtttgatt
ggccatactcagccacgccgattggccgccagaagtgtggcaacccgcgtagctgaagag
atcggcacgccgctgggcgagttggtcggttatcaggtgcgctttgaagaccagagcaac
gagcgcagcctgatcaagctgatgaccgacggtatcttgctggccgaaacccagcatgac
cgctatctcgaaaagtacgacacgatcattgtcgacgaggcgcacgagcgcagcctgaac
atcgacttcctgcttggttacctgaaaaccctgttgtcgcgtcggcccgatctgaagctg
atcatcacctcggcgaccatcgacctgcagcgcttttccaagcacttcaacgacgcgccg
attgttgaagtgtctgggcgtacttatccggttgaaacctggtaccgcccgctggccgcc
gagcaggacgaagagggcaatcaggtcgaggaagacttgtctgtcgatcaggcgctgctc
gccagcattgatgagattgctgcgttcgagcgcagtgaaggcaaattgcccggcgatgtg
ctggtgtttctccccggtgaacgcgagatccgcgaagcggccgactggctgcgcaaggcc
aatttgaaacacaccgaggtgttgccgctctatgcgcgcctgacgccggccgagcaacag
aaaattttccagccgatgcctgcgcgcaaaatcgttctggccaccaacgtcgccgaaact
tcgctcaccgtgcccggtattcgctatgtgatcgacagcggcacggcgcggatcagccgc
tacagctaccgcgccaaggtccagcgattgccggttgaggcaatctcgcaagccagtgcc
aatcagcgtaaaggccgttgcgggcgggtggagccggggatttgtatccgcctctacagc
gaagaagatttcaactcgcgtcctgagtttactgatcccgagattctgcggaccaatctg
gcggcggtaatcctgcagatgctgcatctgcgactgggtgagattaaccagttcccgttt
attgaaccgccagatggcaaggccatcagtgacggtttcaacctgcttcaggagctctcg
gcggttagccgtgaaggccagctgacagcgctcggacgccagttggcgcgcctgccgatt
gacccgcgtctgggccggatggtgcttgagggcgcgcggttgggtagcctcgatgaagtg
ctgattattgccagtaatctatcagtgcaagaccctcgcgaacgcccatcggaccgccag
caagcagcggatcaggcccatgcgcaatggaaggacgtggactcggacttcgccgcgctg
gtcaacctgtggcgaggctttgaggagcagcgtcaggcgttgggctcgagtgcgctgcgc
agttggtgccggaagaacttcctcaactatttgcgcttgcgtgaatggcgcgatgctcat
cgccagttggtgttgatcagccgcgacctgcaattgaatgccaagccggcggcgaacaaa
cccgctgccgccaaggccaaggctgctgagggcgaggagctttcggcagctgagaaatcg
gtgggctatcaaacgctgcacaaggcgattctggcaggcttgctcagccagatcgggcag
aagaccgaagatggcgattacctgggcgcgcggcaacggcgcttctggattcatccctcg
tctggcattggccgcaagcgtccgcagtggttgatggcctcagaattggtcgaaaccacc
aagctgtttgcgcgcatggtcgccaagatcgaaccggactggatcgagccgctggcaggt
catctgatcaagaaaaatcactttgaaccgcactgggaaaagaagcgcgggcaggtggtg
gcttacgagcaaatcaccctgtacggcatgatcgtggtcgggcgcaggcctgtgcacttt
ggcccgattgagccggtggtatcgcgtgagctgtttatccgcgaaggtctggtcggtggc
gaaatcaattcgcgggcgcgttgtttgtccgccaatcgccaactgctggaaaagctcgac
gaactggaagccaaggcgcggcgccgggatattctggcggacgaagaggcgatgttcgcg
ttctacgatgcgcgcattccggcggatatctatcagaccgccagctttgagtcctggtac
aagcgcgaaagcgcgaagaacccgcagttgttgatcatgcgcgaggaagatgtgctcgcg
cgtgatgccaaggaggtcacggccagcctgtatccggataccctgcaattgggcgatttg
cagttacccatgagttaccacttcgagcctaaccacccgcgtgacggtgtcacggtacgg
gtgcctgcgccgttgctaccgcagttgcagcccgagcgtctcgaatggctggtgccgggt
ctgcttgaggccaaatgcatggcgctggtgcggggtttgccaaaggcgctgcgcaagaat
tttgtgccggtgccggactttgtggcggccgctctcagcaagatcacctttggcgagggc
agcctgccgcaatcgttgggccgcgagttacaacgcatgaccggcgcgcgcgtgccggat
gaggcgtgggccgagtctgctggcgctgttgaaagccacctgcgaatgaatatcgaggtg
gtggacacccgtggcaagttgctcggcgaaggccgtgatctggccgagctgacggcgcgc
ttcagtgaagccagccaggctgcattggcgattccgcaaagcaaaacagccgacaagcct
atcgaggccaagggctttgccgaggtcgccgaaaagactcagcatcaagttgccgggttg
accatgacggtgtatccagcactggtcgaagaggccggcagcgtcaaggaagggcgtttc
tcgacagccgccgaagctgagtttcagcaccggcgtgcactgcaacgcttgctcctgcag
caactggcagaaccggccaagttcctgcgcggcaaattgcccgggctgaccgagctgggg
ttgttgtaccgcgagctgggtcgggttgatgcgttggttgaagatatcctcttagccagt
ctcgacagctgcatgcttgaagggcagcaacctttaccgcgtgacggtgcggcgctggct
gcattggccagcaaacgcggcgactgggtcgagcatgccgagcgtttggccaggctggtg
ctggaaattctcaagctttaccacagcctgcaaaagcgctttaagggcaagattgatctg
gcccaggccattgccctgaacgatatcaagcagcagctggccaatctggtgtatccgggt
tttgttcgcgaaactccggcggtgtggcttaaagagctgccgcgctacttgcgggcgata
gagcagcgcctggataaactcggctcgcaagtgcagcgcgaccgggtctggagtggcgag
cttgcgcaatgttggcagcaatacagtgcccggctggccaagcatctgcaggagggcaag
cgcgacgagcaattgctgctctatcgctggatgctggaggaataccgtgtctcgctgttt
gcccaacaactgggaaccaagattccggtgtctgataagcgcctgagcaagcaatggaac
aatgtcgaggcctga
DBGET
integrated database retrieval system
