Pseudomonas marincola: PMYSY11_1385
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Entry
PMYSY11_1385 CDS
T07318
Name
(GenBank) ATP-dependent RNA helicase SrmB
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pmao
Pseudomonas marincola
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pmao03009
]
PMYSY11_1385
Enzymes [BR:
pmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMYSY11_1385
Ribosome biogenesis [BR:
pmao03009
]
Prokaryotic type
rRNA helicases
PMYSY11_1385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAE6903443
LinkDB
All DBs
Position
PMYSY11:1454473..1455834
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AA seq
453 aa
AA seq
DB search
MFSQFALHERLLKAVAELKFVEPTPVQVAAIPAALQGNDLRVIAQTGSGKTAAFVLPMLS
RLLGDGGSQPRVCLRAMILLPTRELAQQTLKEVERFAQFTFLKAGLITGGEDFKQQAAML
RRVDILIGTPGRLIEHANAGNLLLDEVEVLVLDEADRMLDMGFAEDVERLAGLCNGEHQT
LLFSATSGGAGLREMVSKVLKDPTHLQLNSVSQLNEGTRQQIITADHNYHKELLVDWLLA
NETYDKAIIFTNTRVQADRLYGKLVARDYKAFVLHGEKDQKDRKLAIDRLRQGAVKILVA
TDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGGEGLAISLICHNDWNLMSSIE
RYLKQRFERRNIKEHKGLYQGPKNLKASGKAAGTKKKKTDAKTGKKAAAKKPAAKSPSKR
NTINKPKSDAPVLVSKDGLAPLKRRKPAEPGAE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
gtgttttcccaattcgccctgcatgaacgcctgcttaaagccgtggccgagcttaaattt
gtcgagcctactccggtgcaggtggcggctattccggctgccctgcaaggcaatgacctg
cgggtaattgcacagactggcagcggcaagaccgccgcctttgtattgccgatgctcagc
cgcctgctcggcgacggtggctcgcagccgcgtgtgtgcctgcgcgcgatgatcctgctg
ccaacccgcgagctggcgcaacaaaccctcaaggaagttgagcgctttgctcagttcacc
ttcctcaaggctggcctgatcaccggcggtgaagacttcaaacagcaggcagcgatgttg
cgtcgtgtggatattctgatcggcacccctggtcgcctgatcgaacatgccaacgccggc
aacctgttgctcgatgaagttgaagtgctggtgctagacgaagccgatcgcatgctcgac
atgggttttgccgaagatgtcgaacgtctggccgggctgtgcaacggtgagcaccagacg
ctgttgttctctgccaccagtggcggtgcagggctgcgtgagatggtcagcaaggtgctg
aaagatccaactcatttgcagctcaacagcgtcagccagctcaatgaaggcacgcgccag
caaatcatcaccgccgaccataactaccacaaggaattgctggtcgactggttgctggcc
aacgagacttacgacaaggcgattatcttcaccaatacccgcgtacaggctgatcgtctg
tacggcaaactggttgcgcgcgattacaaagcgttcgtcttgcatggtgaaaaggatcag
aaagaccgcaagctggcgattgatcgcttgcgtcagggcgcggtgaagattctggtggca
accgacgtcgccgcccgtggtctggacgttgacgggctggatctggtgatcaacttcgac
atgccgcgctcgggcgatgaatacgtgcatcgaatcggtcgtaccggccgtgccggtggc
gaaggtctggcaatctcgttgatctgccacaacgactggaacctgatgtcgagcattgag
cgctacctcaagcagcgtttcgagcgtcgtaacatcaaggagcacaaaggcctgtatcag
ggtcctaagaacctcaaggcgtctggcaaggcggccggcaccaagaagaaaaagaccgac
gctaaaaccggcaagaaggccgctgcgaaaaaaccggcagccaagtcgccaagcaagcgc
aacacgatcaacaagccaaagtccgacgcgccagtattggtgagtaaagacggcttggcc
ccgctcaagcgccgcaaaccggccgagccaggcgccgagtaa
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