Pseudomonas marincola: PMYSY11_1770
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Entry
PMYSY11_1770 CDS
T07318
Symbol
uvrB
Name
(GenBank) excision nuclease subunit B
KO
K03702
excinuclease ABC subunit B
Organism
pmao
Pseudomonas marincola
Pathway
pmao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PMYSY11_1770 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_1770 (uvrB)
DNA repair and recombination proteins [BR:
pmao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PMYSY11_1770 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PMYSY11_1770 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
DEAD
UVR
AAA_30
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAE6909444
LinkDB
All DBs
Position
PMYSY11:1808782..1810797
Genome browser
AA seq
671 aa
AA seq
DB search
MSEFELVTRFQPAGDQPEAIRQMVEGLQAGLSHQTLLGVTGSGKTFSIANVIAQVKRPTL
VLAPNKTLAAQLYGEFKSFFPHNAVEYFVSYYDYYQPEAYVPASDTFIEKDASINDHIEQ
MRLSATKALLERKDAIIVTTVSCIYGLGSPESYLKMVLHVDRGDRMDQRELLRRLADLQY
TRNDMDFARATFRVRGDVIDIFPAESDLEAVRIELFDDEVESISAFDPLTGEVIRKMPRF
TFYPKSHYVTPRETLMEAIDKIKVELAERLEYLRGADKLVEAQRLEQRTRFDLEMILELG
YCNGIENYSRYLSGRGPGMPPPTLYDYLPDEALLVIDESHVSVPQVGAMYKGDRSRKENL
VNYGFRLPSALDNRPMRFEEWEAASPQTIFVSATPGPYEAEHAGRVIEQVVRPTGLVDPE
IEVRPALTQVDDLMSEIHKRVEIGERVLVTTLTKRMAEDLTDYLGDHGIKVRYLHSDIDT
VERVEIIRDLRIGAFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRA
ARNLNGRAILYADRMTGSMERAIGETERRRDKQIAFNKANGIVPKGVFKDVKDIMEGAVV
PGSRSNKRKGMAKAAEEQARYENELRSPSEIAKRIRQQEEKMYQLARDLEFEAAAQMRDE
IQKLRDRLLQV
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtctgagtttgaattagtcacccgttttcagcctgcaggtgatcaaccggaagcaatc
cggcagatggtcgagggcctccaagcagggctttctcaccagaccctgctcggcgtgacc
ggctcgggcaagaccttcagcattgccaacgtaattgctcaggtaaagcgtccgacgctg
gtgctggcgccgaataaaaccctggccgcgcagctgtacggggagttcaagagtttcttc
ccgcacaacgcagtcgaatatttcgtttcctactacgactattaccagcccgaggcgtat
gtaccggcgtccgacacgttcatcgagaaagatgcttcgatcaacgaccatatcgagcag
atgcggctgtcggcgaccaaggcgctgctggagcgcaaagacgcgatcatcgtcaccacc
gtatcgtgcatttacggtctgggcagccccgagtcgtacttgaaaatggtcctgcacgtt
gatcgtggcgatcgtatggaccagcgcgaactgctgcgccgtctggccgacttgcaatac
acccgcaacgacatggactttgcccgtgcgaccttccgggtgcgtggcgatgtaatcgac
atcttcccggcggaatcggacctcgaagcggtgcgcattgagctgttcgatgatgaggtg
gagagcatttcggcatttgatccgctgaccggcgaagtgatccgcaaaatgccgcgcttc
accttttaccccaagagccactacgtaacgcctcgcgaaacgttgatggaggcgatcgac
aagatcaaggtcgagttggccgagcgcctcgaatacctgcgcggcgctgacaagctggtc
gaagcgcagcgccttgagcagcgcacacggtttgatctggagatgattctcgaactcggc
tactgcaacggcatcgaaaactactcgcgttatctgtccggtcgcgggccgggcatgccg
ccgccaacactctacgattacctgccggacgaagccctgctggtgatcgacgagtcccac
gtcagcgtgccgcaagtgggcgccatgtacaaaggcgaccgctcgcgcaaagagaatctg
gtcaattacggcttccgtttaccgtcggcgctggataaccgcccgatgcgttttgaggag
tgggaagccgccagcccgcaaacaatatttgtctcggcaacgcccggaccgtatgaagct
gaacatgccggacgggtgattgagcaagtggtgcggccgaccggtctggtcgacccggaa
attgaagtgcgcccggcgctgacgcaggttgatgacttgatgtcagaaatccacaagcgc
gtggagatcggtgagcgcgtgctggtgaccacactgaccaagcgcatggctgaagatctg
accgattatctcggcgatcacggcatcaaggttcgctatctgcactccgacatcgacacg
gtagagcgggtcgagattattcgtgatctgcgcatcggtgcgtttgatgtgctggtcggg
atcaacttgctgcgtgaaggcttggatatgccggaagtctcgctggtggcgattctcgat
gccgacaaggaaggcttcctgcgttccgagcgttcattgatccagaccattggccgcgcc
gcccggaacctcaacggccgggcgattctctacgcggaccgcatgactggctccatggag
cgcgcaatcggcgaaaccgaacggcgccgcgataaacagatcgccttcaataaggccaac
ggcatcgtgcccaagggcgtgttcaaggacgtcaaagacatcatggaaggcgccgtggtg
ccgggttcgcgcagtaacaaacgcaaaggcatggccaaagcggcagaagagcaggcgcgc
tacgaaaacgaactgcgctcgccgagcgagatcgccaagcggattcgccagcaggaagag
aagatgtaccagttggcgcgtgatctggagttcgaagctgcggcgcaaatgcgcgacgag
atacagaaattgcgcgaccgcttattgcaggtttga
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