Pseudomonas marincola: PMYSY11_1986
Help
Entry
PMYSY11_1986 CDS
T07318
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMYSY11_1986 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmao03019
]
PMYSY11_1986 (rne)
03009 Ribosome biogenesis [BR:
pmao03009
]
PMYSY11_1986 (rne)
Enzymes [BR:
pmao01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PMYSY11_1986 (rne)
Messenger RNA biogenesis [BR:
pmao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PMYSY11_1986 (rne)
Ribosome biogenesis [BR:
pmao03009
]
Prokaryotic type
rRNA processing factors
PMYSY11_1986 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
CAE6912901
LinkDB
All DBs
Position
PMYSY11:complement(2048740..2051841)
Genome browser
AA seq
1033 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF
GSERHGFLPLKEISREYFKKAPEGRVNIKEVLSEGQEVIVQVEKEERGNKGAALTTFISL
AGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLNAPADMGLIVRTAGLGRSSEEMQW
DLDYLLQLWSAIKEASQDRPAPFLIYQESNVIIRAIRDYLRQDIGEVLVDSVEAQEEALS
FIRQVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIFIDPTEALVSID
INSARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKV
REALEADRARVQVGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGIIRDVESLSLAI
LRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHF
EVQRLRDDSLEAQTTQSSYEMAVTEVEEEKQASGTRTLVRQEAAIKAAPPRSAPTPAEAP
AAAPAAATEPSLFKGLVKSLVSLFATKEEEKPAVIEAKPVERKPRSSEERRNGRQQNRNR
GNRRDEERKPREERAPREERAPREERQPRAAREERQPRDSVEIREPQEQRQSRPPRDGGE
GRRERKPREERQPRELRDPIDSNDSNNAEQAQNERPAREPRQPRPPREERQPRKEAVAAD
TAEEALPDTDQQASDEQDSNEGERPRRRSRGQRRRSNRRERQRDANGNLIENAEESTEGA
EPAKTENSTLAETTAAATGAVAATALAATAAAVEAATAESAPAEQKPAIEPKQPKTEVAA
PAEVAAGAAEVEAPAKAEPTEAVEAVVEANAETATETAQPETVSTAPVEAEVAAEAQAPV
EAAPAVEPTAVPAAEPKAEVVAEPIAQPASEAPAVAETTEKSESVEVQAPVAEPAVEAAS
EVAAEVAEQPAAKEPAQLPTLNGRAPNDPREVRRRRLEAERIAREAEAAKADVSETAEAT
EPQAEQDADKPQA
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaacgcaactcaacccgaagagttgcgtgttgccctagtcgat
ggccaacgcctatacgacctggacattgaatctggcgcccgtgagcaaaaaaaggccaac
atctataaaggccgcatcacccgcgtcgaacctagcctggaagccgctttcgtagatttc
ggctccgagcgtcatggtttcctcccgctaaaagaaatctcccgcgaatacttcaagaag
gctcctgaaggccgcgtcaacattaaagaagtgttgagcgaaggtcaggaagtcatcgtt
caggtcgagaaagaagaacgcggcaacaagggcgcagccctgaccacgttcatcagtctg
gccggccgttacctcgtgctgatgccgaacaacccgcgtgctggtggcatctcgcgccgt
attgaaggcgaagagcgcaacgaactgcgcgaagccctgaatggcctcaacgcccctgct
gacatgggcctgatcgtgcgcactgcgggtctgggtcgttccagcgaagaaatgcagtgg
gacctcgattacctgctgcaactgtggagcgcgatcaaagaagcctcgcaggatcgcccg
gcacccttcctgatctatcaggagagcaacgtcattatccgcgctatccgcgattacctg
cgccaggacatcggcgaagtactggtcgacagcgttgaagcacaggaagaagccctgagc
ttcatccgtcaggtgatgccgcagtacgccagtaagatcaagctgtacgaagacagcgtg
ccgctgttcaatcgcttccagatcgaaagccagatcgaaaccgctttccagcgtgaagtt
aaattgccttccggcggctcgatcttcatcgacccgacagaagcactggtgtcgatcgac
atcaactcggcgcgcgccaccaaaggcagcgacatcgaagaaactgctctgcagaccaac
cttgaagccgctgaagagatcgcgcgccaactgcgcctgcgtgacatcggtggcctgatc
gtgatcgacttcatcgacatgacgccggccaaaaaccagcgcgcagtcgaggagaaggtt
cgcgaagcgctggaagctgaccgcgcccgtgttcaggttggccgcatttcgcgtttcggc
ctgctggaaatgtcgcgtcagcgtctgcgtccgtcactgggtgaaaccagcggcatcgtt
tgcccacgttgcaacggccaaggcatcatccgtgacgttgagtcgctgtcgctggccatc
ctgcgcctgatcgaagaagaagccctgaaagaccgtaccgccgaagtacgcgctcaggtg
ccaatcccggttgccgccttcctgctgaacgagaaacgcaactcgatcaccaagatcgaa
ctgcgcacccgtgcacgcatcgtcattctgccgaacgatcacctcgaaacgccgcacttc
gaagtgcagcgcctgcgtgacgacagcctcgaagctcagacgacccagtcgagctacgag
atggccgtgaccgaagttgaagaagagaagcaagccagcggtactcgtactctggttcgc
caggaagccgccatcaaggctgctcctccgcgctctgcgccaacgccggcagaagctcct
gctgcagccccagctgctgcaaccgagccaagcctgttcaaaggtctggtgaagtcgctg
gtgagcctgttcgccaccaaagaagaagagaagcctgcggtaatcgaagccaagcctgtc
gagcgtaagccacgcagcagcgaagagcgtcgtaatggccgtcagcagaaccgtaatcgc
ggcaaccgtcgtgatgaagagcgcaagccacgcgaagaacgcgcaccgcgtgaagagcgt
gctccacgtgaggagcgccaaccgcgcgccgcccgtgaagagcgccagccgcgtgacagc
gtagaaatccgtgagccgcaggaacagcgccagtcgcgtccgccgcgtgacgggggcgaa
ggccgtcgtgagcgcaagccgcgtgaagagcgtcagccacgtgaactgcgtgacccaatc
gacagtaacgacagcaacaacgccgagcaggcgcaaaacgaacgccctgcacgtgagccg
cgccagccgcgtccaccgcgcgaagagcgtcagccgcgcaaagaagctgtagctgccgac
actgctgaagaagccctgccggataccgatcagcaagcctctgacgagcaagacagcaac
gaaggcgagcgtcctcgtcgccgttcacgcggtcagcgtcgtcgcagcaaccgtcgtgag
cgtcagcgtgatgccaacggcaacctgatcgaaaacgctgaagaaagcaccgaaggcgct
gaaccagccaaaaccgaaaactctacgctggcagaaaccactgcagcagcaaccggcgcc
gtagccgccacagcattggccgcaactgcagccgctgttgaagccgccactgctgaatcg
gcacctgccgagcagaagcctgctattgagccgaagcagcctaaaactgaagttgccgca
cctgcggaagttgcagctggcgcagcagaagttgaagcacctgccaaggctgagccgact
gaagctgtagaagctgtggttgaggcaaatgctgaaactgctactgaaacagcccagcca
gaaaccgttagcactgctccggttgaagcagaagttgctgctgaagcacaggcaccggta
gaggctgcacctgcagtcgagcctactgccgtgcctgccgccgagcctaaagctgaagtt
gtagccgagcccattgctcagcctgcaagcgaagcgccagcagttgctgaaacgactgaa
aagtctgaatcagttgaagtgcaagcacctgttgctgagccggccgttgaagcagccagc
gaagtagctgccgaggttgctgagcaacccgctgctaaagagcctgctcaactgccaaca
ctgaacggtcgcgcacctaacgacccacgtgaagttcgccgccgtcgccttgaggccgag
cgcattgctcgtgaagcagaagctgcaaaggcagatgtatctgaaactgctgaggccact
gagccgcaagcagagcaggacgcagacaagccgcaagcctga
DBGET
integrated database retrieval system
