Pseudomonas marincola: PMYSY11_2065
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Entry
PMYSY11_2065 CDS
T07318
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMYSY11_2065 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmao03019
]
PMYSY11_2065 (deaD)
03009 Ribosome biogenesis [BR:
pmao03009
]
PMYSY11_2065 (deaD)
Enzymes [BR:
pmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PMYSY11_2065 (deaD)
Messenger RNA biogenesis [BR:
pmao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PMYSY11_2065 (deaD)
Ribosome biogenesis [BR:
pmao03009
]
Prokaryotic type
rRNA helicases
PMYSY11_2065 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
AAA_30
HrpB7
HEM4
Motif
Other DBs
NCBI-ProteinID:
CAE6914121
LinkDB
All DBs
Position
PMYSY11:2127484..2129163
Genome browser
AA seq
559 aa
AA seq
DB search
MTQEIGGFAALGLHPSILAALTAVGYEEPSPIQQQAIPVILAGQDMIGQAQTGTGKTAAF
ALPLLSRIDISKREPQALILAPTRELALQVATAFETYSKQLPGLNVVAVYGGAPMGPQLK
AIRQGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEMLKLGFMDDLEVIFQAMPAT
RQTVLFSATLPHSIRAIAEKHLRNPQHIKIAAKTQTVARIEQAHLLIHADQKVNAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVGEVKLPNAQQVLDARIKKLTTSLAPLVADAEASHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLADVEKEQPLVPNSGPRERSDRGGERGERPVRSDRERRAPMPLGE
GRARCRTALGARDGIAAKNLLGAILNEGGLARDAIGRIQIRESFSLVELPEDGLERLLAK
LKDTRVAGKPLKLRRYRED
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgcgctcggacttcacccaagtattcttgcagca
ctgactgcagtgggctacgaagagccatccccaattcagcaacaagccatcccagttatt
ctcgccggccaggacatgattggtcaggcgcagacgggtaccggtaaaacagccgcattc
gctttgccgctgctcagccgtatcgacatcagcaagcgtgagccgcaggctctgattctg
gcgccgacccgcgaactggctctgcaggttgcaacggcattcgaaacctattccaagcaa
ttgcctggccttaacgttgttgctgtttacggtggcgccccgatgggcccgcagttgaaa
gcaatccgtcagggtgcccaggttatcgtggcaacgccgggtcgtctggttgaccacctg
cgccgcgacgagaaagtactctcgaccattcagcacctggtgctcgatgaagcggacgag
atgctcaagctgggctttatggacgatctggaagttattttccaggccatgccggcaact
cgccagacagtattgttctcggccactctgccgcactcgattcgcgccattgctgaaaag
cacctgcgcaatccgcagcacatcaaaatcgctgccaagacccaaaccgttgcgcgtatc
gaacaggctcacctgttgatccacgctgaccagaaggttaacgccgtactgcgtttgctc
gaagttgaagagtttgatgcgctgatcgcattcgtgcgtaccaagcaagccactctggat
ctggccagcgcccttgaagccaaaggctacaaggctgctgcactgaacggtgacatcgcc
cagaatcagcgtgagcgcgtaatcgactcgctgaaagacggtcgtctggacatcgtagtc
gcaaccgacgtggctgctcgtggcctcgacgtgccgcgcatcactcacgttttcaacgtg
gacatgccgtacgacccagagtcttacgttcaccgtatcggccgtactggccgtgccggt
cgcgaaggtcgtgcactgttgctggtaacgccgcgtgagcgtcgtatgctgcaggttatc
gagcgtgttaccggccagaaggttggcgaagtcaaactgccaaacgctcagcaagttctc
gatgcacgcatcaagaagctgaccaccagcctggcacctctggttgccgacgctgaggcc
agccacggtgatttgcttgatcgtctgactgcagacatcggttgctcgccacgtgctctg
gctgccgcattgctgcgcaaggccaccaatggtcaggcgctgactttggctgacgtcgag
aaagaacagccattggttccaaacagtggcccgcgtgagcgcagcgatcgtggcggtgag
cgtggcgagcgtccggttcgttctgatcgcgagcgtcgtgcgccaatgccgctgggcgaa
ggccgtgcacgttgccgtaccgcgctgggtgcgcgtgacggtattgctgccaagaacctg
ctgggcgcaatcctcaacgaaggcggccttgcgcgtgacgcaatcggtcgcatccagatc
cgcgagagcttcagtctcgttgaactgccggaagacggcctggagcgcttgctggccaag
ctcaaggacacccgtgttgctggtaagccattgaagctgcgccgttaccgcgaagactga
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