Pseudomonas marincola: PMYSY11_2416
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Entry
PMYSY11_2416 CDS
T07318
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PMYSY11_2416
09124 Replication and repair
03420 Nucleotide excision repair
PMYSY11_2416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmao03021
]
PMYSY11_2416
03036 Chromosome and associated proteins [BR:
pmao03036
]
PMYSY11_2416
03400 DNA repair and recombination proteins [BR:
pmao03400
]
PMYSY11_2416
Enzymes [BR:
pmao01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PMYSY11_2416
Transcription machinery [BR:
pmao03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PMYSY11_2416
Chromosome and associated proteins [BR:
pmao03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PMYSY11_2416
DNA repair and recombination proteins [BR:
pmao03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PMYSY11_2416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Helicase_C
Motif
Other DBs
NCBI-ProteinID:
CAE6920270
LinkDB
All DBs
Position
PMYSY11:2514550..2516877
Genome browser
AA seq
775 aa
AA seq
DB search
MGRCVTYQVAVRALCEFTAKEGDLDLRFTPSPTAQEGMTGHAIVVARRGAYYQAELPLSG
EYPGLRVRGRADGYDPEEHRLEEIKTHRGDISRIPENHRLLHWAQAKVYAWLLCQERGFE
SINIAVVYYNVLTQHETAFHLHCSREELRDFFELQCRRFIVWAEYEAAHRIERDKALQEL
KFPHAQFRAGQRQLAESVYRAARDGHALMAQATTGIGKTLGTLFPQLKAFAEKNIDRLFF
LTAKTPGRRLALDALETLRSQQTDMPLRVLEHVARDKACEHPDKSCHGESCPLAKGFYDR
LPAARKAALDGQWLNQQRVRDVARAHQICPYYLSQELCRWADVVVGDYNYYFDMGGLLHH
LTLLNEWRVTLLIDEAHNLIERARGMYTAELDQGHFNLLRRSAPPSLKGPLARVARHWQQ
LHDDQEQAYQVYPLAPELFLMALQKAVSSLTDHLTANPTGNDGQLLEFYLDAMLFCRLAE
AFGPHSLFDISRDESKGVSTLCIRNIVPAPFLAPRFSAAHSSTLFSATLSPANYYADLLG
LPAETPWIDVESPFLAEQLQVQAISNLSTRYAHRPSSLAPIAHLIATQFNQRPGNYMAFF
SSYDYLQHAVRALKAAHPDIPVWQQSRKMDEFERQGFLDRFTHSSQGIGFAVLGGAFGEG
IDLPGDRLIGAFIATLGQPQINPINEQIRDRMETMFGRGFDYTYLYPGMQKVVQAAGRVI
RTQQDTGVVYLIDDRFNQPAIRKLLPTWWQVQRHRLPPKPAPLMLLPVTPLSADD
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atgggccgctgcgtgacgtatcaggtcgccgtacgtgcgctgtgcgagttcaccgccaag
gagggtgatctcgacctgcgtttcacgccctcgcccaccgcgcaggaaggcatgaccggc
cacgccatcgtcgttgcccgccgtggggcttattatcaggcggaattgccgctgagcggc
gagtatcccggcctgcgcgtgcgcggccgcgctgatggctatgacccggaagaacatcgc
ctcgaagagatcaagacgcaccgcggcgacatcagtcgcataccggaaaaccatcgcctg
ctgcactgggcgcaagccaaggtttatgcctggctgttgtgtcaggagcgcggcttcgag
tcgatcaatatcgcggtggtgtattacaacgtactcacccagcacgaaaccgcgtttcac
ctgcattgcagccgtgaggaactgcgcgacttctttgagttgcagtgccggcgctttatt
gtctgggccgaatacgaggcggcgcaccgcattgaacgcgacaaggccttgcaggagctg
aaatttccgcatgcgcaatttcgtgcaggccagcgccagcttgccgagtccgtgtatcgc
gccgcacgcgacggccacgcgctcatggcgcaagccaccaccggcatcggtaaaaccttg
ggcacgctgtttccgcaactcaaggcattcgccgagaaaaatatcgaccggctgttcttt
ctcactgcgaaaacacccggccgccgtctggcccttgatgcgctggaaacattgcgcagc
caacagaccgacatgcccttgcgtgtgcttgagcatgtcgcccgcgacaaggcctgcgag
catccggataaatcctgccatggtgaatcctgcccgctggccaaaggcttttatgatcgc
ctgcctgcggcgcgcaaggccgctctggatggccaatggctcaatcagcagcgcgtgcgg
gatgtggcgcgagcgcaccagatatgcccctattacctgagtcaggaattatgccgctgg
gcggacgtggtggtcggagactacaactactacttcgacatgggcggcctgctgcatcac
ctgacgctgctcaatgaatggcgggtaacgctgctgattgacgaggcgcacaacctgatt
gagcgcgcgcgcggcatgtacaccgccgagctggatcagggccacttcaacctgctgcgc
cgttcagcgccgccgtccttaaaaggcccgttggcgcgggtagcgcggcactggcagcaa
ctgcatgatgatcaggagcaggcctatcaggtgtatccgctggcacctgagttattcctg
atggccctgcaaaaagccgtgagttcactcaccgatcacctcaccgcgaaccccaccggc
aacgacggccaactgctcgagttctaccttgacgccatgctgttctgccgcctggccgaa
gcattcggcccgcactcgctattcgacatcagccgcgacgaaagcaaaggtgtatcgacc
ctgtgcattcgcaacatcgttccggcgcctttcctggcgccacgtttttcagccgcgcac
agcagcaccctgttctcggccacactcagcccggccaattactatgcagacctgcttggt
ttacccgctgaaacgccttggatagacgttgagtcgccgtttcttgccgagcaattgcaa
gttcaggccatcagtaacctcagcacccgctacgcgcaccgccccagttcattggcaccg
attgcccatctgatcgcgacccagttcaatcagcgccccggcaattacatggcatttttc
agcagctacgactacctgcaacatgccgttcgcgcactcaaggcggcgcacccggacatc
cccgtgtggcaacagtcgcgcaagatggacgaattcgaacgacagggctttctcgaccgc
ttcacacacagcagccagggcattggctttgccgtattgggcggcgcatttggcgaaggg
attgatttgccaggcgaccggctgatcggggcattcattgccacacttggccaaccgcag
atcaacccgatcaatgagcagattcgtgaccgcatggaaaccatgttcggccgggggttt
gattacacctacctgtaccccggcatgcaaaaggtcgtgcaggccgctggccgggtgatt
cggacccaacaagacaccggcgtggtctatttgattgatgaccgtttcaatcaaccagcc
attcgcaaactgttaccgacctggtggcaggtgcaacgtcatcgtctgccacccaagcct
gccccgctaatgctgttgcctgttacaccgctatctgcggatgactag
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