Pseudomonas marincola: PMYSY11_3398
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Entry
PMYSY11_3398 CDS
T07318
Symbol
clpV
Name
(GenBank) AAA+ ATPase ClpV1
KO
K11907
type VI secretion system protein VasG
Organism
pmao
Pseudomonas marincola
Pathway
pmao02025
Biofilm formation - Pseudomonas aeruginosa
pmao03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
PMYSY11_3398 (clpV)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02025 Biofilm formation - Pseudomonas aeruginosa
PMYSY11_3398 (clpV)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
pmao02044
]
PMYSY11_3398 (clpV)
Secretion system [BR:
pmao02044
]
Type VI secretion system
Imp/Vas secretion system core components
PMYSY11_3398 (clpV)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_2
AAA_lid_9
AAA
AAA_5
AAA_22
AAA_16
ClpB_D2-small
AAA_7
nSTAND3
NACHT
Sigma54_activat
Clp_N
AAA_18
NBD_SMAX1
ResIII
AAA_30
IstB_IS21
AAA_29
T2SSE
Hpr_kinase_C
AAA_24
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
CAE6936733
LinkDB
All DBs
Position
PMYSY11:complement(3543995..3546604)
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AA seq
869 aa
AA seq
DB search
MINVDLQQLIQALEIEARRDLESAAERCISRGGNKVLIEDLLLALLEHRDGLLVRSLQDA
EITPDALQAVLQLKTEQCASNNPVFAPELVQWMQDALLVASLELGQSQIDQRALILALIG
NPLRYAGSRYQPIIAKLNAQRIRDFSLQNEAGKAPPAAAHGGESQLQRFTHNLTQQARDG
KLDPVLCRDAAIRQMIDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPEVLKGV
ELLALDMGLLQAGASVKGEFERRLKGLIDEVKSSPKPIVLFIDEAHTIIGAGGDAGGSDA
ANLLKPALARGELRTIAATTWAEYKKYFEKDPALSRRFQPVQLHEPTVEEAVTILRGLAQ
VYEQSHGIYLRDDAVVAAAELSARYLAGRLLPDKAVDVLDTACARVRISLAAAPDALERV
RAELAQGNRQLQALQRDAESGLPVDQECLALLQARLVEAELEQQSLHERWCKQRDMAERL
LELRQLLAAARVEAENAGEAFEDSNTDADILAYEAELSWVHQSLCEAQQAERLVSFEVCP
RLVAEVISAWTGVPLAQLAREHNARIASFATDLRLRILGQEQAIEALDRSMRANAAGLSK
QDAPVGVFLLVGPSGVGKTETALALAELLYGGDRFITTINMSEFQEKHTVSRLIGAPPGY
VGYGEGGMLTEAVRQKPYSVILLDEVEKADPDVLNLFYQIFDKGVANDGEGREINFCNCL
ILMTSNLASEQISALCKLDAKPSVEQLQEAIQPTLSQHFKPALLARMKVVPYFPVDEQIL
RELVELKLQRLQVRLAKRQLQLSYCPQLVALLSERCKQSDSGARFIDHLLDLHLLPLIAD
RLLDAMATGESISRVHATLANGQIACEFA
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgattaacgtcgacctgcaacagctcattcaggcactcgaaatagaggcccgacgtgat
cttgaaagtgccgctgagcgttgtatttcgcgtggcggcaacaaggtgttgattgaggat
ttgttgctcgcgttgcttgagcatcgtgatggtttgctggtgcgctcgctgcaggacgca
gagattacgccggatgctttgcaggcggttttgcagcttaaaaccgaacaatgcgcctcg
aataatccggtctttgcgccggagttggtgcagtggatgcaggatgcgttgctggttgcg
tctctggaattgggacagagccagattgatcagcgcgccttgattctagccctgataggc
aacccgttacggtatgccggtagccgttatcagccgatcatcgccaagttgaacgcacaa
cgtatccgcgatttttctttgcaaaacgaggccggcaaagcaccgccagcagctgctcac
ggcggcgagtcacaactgcagcgctttacccacaatctcacccagcaagcccgcgacggc
aagcttgatccggtgttgtgccgcgacgctgcgattcgccagatgatcgatattcttgcc
cgtcggcgcaagaataacccgattgtggtgggcgaggccggtgtcggcaaaaccgcaatt
gttgaagggcttgcttcacgcatagctgccggtgaagttccggaggttctcaagggcgtt
gagctgctggcgttggacatgggcctgttgcaggccggtgcgagtgttaagggtgagttc
gagcgccgcctgaaaggcctgatcgacgaagttaaatcttcacccaagccaatcgttctg
ttcattgacgaggcgcataccatcatcggggctgggggcgatgctggaggctcggacgct
gccaatctgcttaagccagcattggcacgcggtgagttgcgcaccattgccgcgacaacc
tgggctgagtacaagaaatactttgagaaagaccctgccttgtcgcgccgcttccagcca
gtccagctgcatgagccaacggtggaagaggccgtaacgattctgcgcggattggcgcag
gtctatgaacaaagccatggcatctatcttcgtgacgatgcggtcgtcgccgccgctgag
ttgtcggcgcgctatctggcgggtcgcctgcttccggacaaagctgtagatgtactggat
acggcgtgcgcaagggtgcgcatcagcctcgccgccgcgcccgatgcattggagcgtgtg
cgcgcagagctggctcagggcaaccgacagcttcaggcgttgcagcgcgatgctgagtcc
ggtttgccggttgatcaagagtgcctggcgctgctgcaagcgcggcttgttgaagctgaa
cttgagcagcagagcctgcatgagcgctggtgcaagcagcgtgatatggcggaacgtttg
cttgagcttcgccagttactcgcggctgcacgtgtcgaagctgaaaacgcaggtgaggcg
tttgaagacagcaataccgatgccgatattttagcgtacgaagccgaattgagctgggtg
catcagagcttgtgcgaagcgcagcaggccgagcggttggtcagttttgaggtatgccca
cggctggttgccgaagttatcagcgcatggaccggtgtgcccctcgcccaactggcgcgt
gaacataacgcccgaatcgccagctttgcgactgatcttcgcttgcgcattctcggtcag
gagcaggccattgaggcgctcgatcgctcaatgcgggctaacgcggctggcttgagtaag
caggatgcgccagtgggcgtgttcctgctggttggccccagtggggttggcaaaaccgaa
accgcgttggccttggctgaattgctgtacggcggcgaccgctttatcaccacgatcaac
atgtccgagtttcaggaaaaacataccgtttcgcggctgatcggcgcgccacctggctat
gtgggttacggcgaaggcggcatgctgaccgaggccgttcggcaaaaaccttattcggtg
atattgctcgacgaagtcgagaaggccgatcccgatgtactcaatctgttctatcagatt
tttgataaaggcgtcgccaacgacggggaaggtcgcgagatcaatttttgcaattgcctg
atcctgatgacatccaatcttgccagcgagcaaataagcgccttgtgcaaattggatgca
aaacccagcgttgagcagctgcaagaggccatacagccgacccttagccagcacttcaaa
cctgcgctgttggcgcgcatgaaagtggtgccttatttcccggtggatgagcagattttg
cgtgagttggttgaactcaagttgcaacgcttgcaagtacgactggctaagcgacagttg
cagctcagttactgcccgcaactggtcgcgcttttgtctgagcgctgcaagcagagcgac
agcggcgcacgctttatcgatcatttgctcgacctgcatctgctgccgctgatcgcagac
cggttgctcgacgccatggcaacgggggagtcgattagtcgggttcatgcaacgctcgcc
aatggacaaattgcgtgtgaattcgcatga
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