Pseudomonas marincola: PMYSY11_3666
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Entry
PMYSY11_3666 CDS
T07318
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
pmao
Pseudomonas marincola
Pathway
pmao03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmao00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PMYSY11_3666 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmao03019
]
PMYSY11_3666 (pnp)
03016 Transfer RNA biogenesis [BR:
pmao03016
]
PMYSY11_3666 (pnp)
Enzymes [BR:
pmao01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PMYSY11_3666 (pnp)
Messenger RNA biogenesis [BR:
pmao03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PMYSY11_3666 (pnp)
Transfer RNA biogenesis [BR:
pmao03016
]
Prokaryotic type
tRNA degradation factors
PMYSY11_3666 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
S1_2
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
CAE6941130
LinkDB
All DBs
Position
PMYSY11:complement(3849164..3851452)
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AA seq
762 aa
AA seq
DB search
MDSAGPNPAAAHEKFDAVAAVESAFNSRYMEPPHHAEMPSAGVLQSVPKGFPKGNIEKEN
TVNPVIKKFQFGQSTVTLETGRIARQASGSVLVTVDDDVAVLVAVTGAKTADPSKGFFPL
SVHYQEKTYAAGKIPGGFFKREARPSEKETLTSRLIDRPIRPLFPEGFQNEVQVICTVIS
TSKKTDPDIAAMIGTSAALAISGIPFNGPIGAARVAFHPETGYLLNPNYEQLQASSLDMV
VAGTKDAVLMVESEAKELTEDQMLGAVLFAHDEFQAVIDAVAELAAEAAKPTWDWQPKAE
NVELLNAIRSEFGAAISQAYTITVKHERYARLGELRNEVVAKFSGEEGQPTAGEVKEVFG
EIEYRTVRENIVNGQPRIDGRDTRTVRGLNIEVGVLDKTHGSALFTRGETQALVVATLGT
ARDAQLLDTLEGERKDPFMLHYNFPPYSVGECGRMGATGRREIGHGRLARRSIAAMLPAA
DEFPYTIRVVSEITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVKEGEKFAVL
TDILGDEDHLGDMDFKVAGTAKGVTALQMDIKIQGITEEIMEIALGQALEARLNILGQMN
QVIAESRTELSANAPTMIAMKIDQDKIRDVIGKGGATIRAICEETKASIDIEDDGSIKIF
GETKDAAEAAKQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDAR
VEKVTDILKEGQEVEVLVLDVDNRGRIKLSIKDVAAAKASGV
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
ttggacagtgccgggccgaatcccgcagctgcccacgaaaagtttgacgctgttgctgca
gtcgaatctgcattcaacagccgctacatggaaccgcctcatcacgccgaaatgccaagc
gcaggcgttttgcagagcgttccaaaaggtttccccaagggcaatatagaaaaggaaaac
accgtgaacccggtaattaagaagtttcaattcggtcagtcgaccgtaactctcgagacg
ggccgtatcgctcgtcaagcgtctggctctgtgctggttaccgtcgatgacgacgttgcc
gttctggttgctgtaactggcgccaaaactgctgacccaagcaaaggctttttcccgctg
tcagttcactatcaggaaaaaacctacgcagccggtaaaatcccaggcggtttcttcaag
cgtgaagcacgtccttccgagaaagaaaccctgacttcgcgtctgatcgaccgtccgatc
cgtccgctgttcccagaaggcttccagaacgaagtgcaggttatctgcaccgtgatctcc
accagcaagaagacagatccggacatcgctgcgatgatcggtacttcggctgctctggct
atttcgggtattccgttcaatggcccaatcggcgccgctcgcgtagcgttccacccagaa
acaggctacctgctgaaccctaactacgagcagcttcaggcttcgagcctggacatggtt
gtagccggtaccaaagacgccgtgctgatggttgaatcggaagctaaagagctgaccgaa
gaccagatgctgggcgcagtactgttcgctcacgacgaattccaggctgtgatcgacgct
gttgccgaactggctgcagaagctgccaagccgacttgggactggcagccaaaggctgag
aacgttgagctgctgaacgctatccgtagcgagtttggcgcggcaatctcacaggcttac
accattaccgttaagcacgagcgttatgcgcgcttgggcgagctgcgcaacgaagtcgtt
gccaagttctcgggtgaagaaggccagccgactgccggcgaagttaaagaagtcttcggc
gaaatcgaataccgcaccgtgcgcgagaacatcgttaacggccagccgcgtatcgacggt
cgtgacactcgtactgtccgtggcctgaacatcgaagtgggtgttctcgacaagactcac
ggttctgcgctgttcacccgtggtgaaactcaggcgttggttgttgccacgctgggtact
gcccgtgacgcacagctgctcgacacccttgaaggcgagcgtaaagacccgttcatgctg
cactacaacttccctccgtactcggtaggtgagtgtggtcgtatgggcgctactggtcgt
cgcgaaatcggtcacggtcgtttggcgcgtcgttctatcgcggccatgctgccagcggct
gatgagttcccgtacaccattcgtgtggtatcggaaatcactgaatccaacggttcaagc
tcgatggcctcggtttgcggtgcatcgctggctctgatggacgctggtgtgccgatgaag
gcgccggttgccggtatcgccatgggtctggttaaggaaggcgagaagttcgcagttctg
accgacatcctgggtgatgaagatcacctcggcgacatggacttcaaagtagcgggtact
gctaaaggtgttaccgcgctgcagatggacatcaagatccagggcatcaccgaagaaatc
atggaaatcgcgctgggccaggcccttgaagcgcgcctgaacattctcggccagatgaac
caggttatcgccgagtcgcgtacagagttgtcggctaacgccccaaccatgatcgcgatg
aagatcgatcaggacaagatccgtgacgtgatcggtaaaggcggcgcgacaatccgtgca
atctgtgaagaaaccaaagcttcgatcgacatcgaagacgacggtagcatcaagatcttc
ggcgaaactaaagatgcagcagaagccgctaagcagcgcgttctgggcatcactgcagaa
gctgaaatcggcaagatctacgtcggtaaagttgagcgtattgttgacttcggtgccttc
gtaaacatcctgccgggcaaagacggtctggtgcacatctctatgctgagcgatgctcgc
gttgagaaagtgaccgacattctcaaagaaggtcaggaagttgaagtactggtactggac
gtggacaaccgcggtcgtatcaagctgtcgatcaaagacgttgccgctgctaaagcgtca
ggcgtttaa
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