KEGG   Pseudomonas marincola: PMYSY11_3858
Entry
PMYSY11_3858      CDS       T07318                                 
Symbol
vgrG4b
Name
(GenBank) Type VI secretion system spike protein VgrG4b
  KO
K11904  type VI secretion system secreted protein VgrG
Organism
pmao  Pseudomonas marincola
Pathway
pmao03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:pmao00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    PMYSY11_3858 (vgrG4b)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:pmao02044]
    PMYSY11_3858 (vgrG4b)
Secretion system [BR:pmao02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   PMYSY11_3858 (vgrG4b)
SSDB
Motif
Pfam: Phage_GPD Gp5_trimer_C Phage_base_V DUF6484 DUF2345 Prophage_tail
Other DBs
NCBI-ProteinID: CAE6944510
LinkDB
Position
PMYSY11:complement(4066135..4068183)
AA seq 682 aa
MFAPANQASFTLAIEGLDHDFKVLGFTGREALNQPYAFDVELVSEQPDLALESLMHKPVF
LQLSATGSGVHGLIYRAGQGDAGKRLSHYEITIRPQLAYLEHSINQRIFQNQTVEQIIEQ
VLEAHGILGTAYQFHLGAVYPARNYCVQYDESDLHFIQRLCEEEGIHYHFQHSRDGHILA
FGDDQTGFPKLAPTAYQQDSGMVADEPVIKRFNLRTQTRTTRVTRRNYDFEKPSTKLESA
AETTFMPDLEDYDYPGRFTQQEHGKQLTNRALERQRSDYELVEGRSDQPSLVSGHFLALS
NHPKSEWNDLWLINEVRHEGKQPQVLEESVSSDTTELKDDFDHGYRNVFIATPWAVIHRP
PLRHPRPRILGSQSAVVTGPQGQEIHCDEYGRVKVVFHWDRAGIVDDKSSCWLRVASSWA
GAKYGSGVTPRIGMEVLVSFLEGDPDQPLISGCLYHKENSVPYPLPANKTISTFKSLSSP
GGAGFNELRVEDKKAQEQIFIHAERDWDQEIEHDQKITVLNERHDTVTANSYSEFKAEEH
RTTHADRKVEIKTDDHLSVGQDQHIKLGVAQLSHAGSEIHIQAGQKIVIEAGAEITLKAG
PSFITISASSIKAVGPTIRLNAGGSPSSGRGATPVLPGQVETADSAEAGRLLTIAQGNAL
LREKPVCLVCAAAEQEARKDAV
NT seq 2049 nt   +upstreamnt  +downstreamnt
atgttcgcgccagccaaccaagcctcgttcaccttggcgatcgaagggcttgatcacgac
tttaaagtgttgggatttaccggccgagaagcactgaatcagccttatgctttcgatgtc
gagctggtcagtgaacagcctgatcttgcgcttgaaagcctgatgcacaagccggttttt
ttgcagctgtcggcaaccggtagcggtgttcacggcctgatctatcgagctgggcaaggt
gatgcaggcaagcgtttaagccactatgaaatcaccattcgcccgcaattggcgtacctc
gaacacagtatcaatcagcgtattttccagaaccagaccgtcgagcaaatcatcgaacaa
gtgcttgaagcccacggcattctcggcacggcttatcagtttcaccttggcgcggtttat
ccggcccgcaactactgcgtgcagtacgatgaatcagacctgcattttattcagcgcctg
tgtgaagaggaggggattcactaccactttcagcacagccgcgacggccacattctggcc
tttggagacgaccagaccggctttccaaaacttgctcccaccgcctatcagcaagactcc
ggcatggtcgccgatgagccggtgatcaaacgctttaacctgcgtacgcaaacccgcacc
acacgcgtaacccgccgtaattatgactttgaaaagcccagcacaaagcttgaaagcgct
gcagaaaccaccttcatgcccgaccttgaggattacgattatccggggcgctttactcag
caagagcacggcaaacaactcaccaaccgggctcttgaacgccagcgtagtgactatgaa
ttggttgaggggcgcagtgatcagccgagtctggtaagtggtcactttcttgctctgagc
aatcatccaaagtctgagtggaatgacttgtggctgatcaatgaagtgcgccatgagggc
aaacagccgcaagttctcgaagagtcagtgagcagcgatacgaccgagctcaaggatgac
ttcgaccacggctatcgcaatgtctttattgctacgccttgggcggtgattcatcggccc
cctttacgccacccccgaccgcgcattctcggcagccaaagcgcagtggttaccggccct
caagggcaagaaattcactgcgatgaatatggccgggtcaaggttgtgtttcattgggac
cgcgccggcattgttgatgataaaagcagctgttggttgcgcgtagcctcaagttgggca
ggcgccaaatatggcagcggcgtcacgccgcgcatcggcatggaagtgctggtgagcttt
ttggaaggcgatcccgaccagccattgatcagtggctgcctgtatcacaaagaaaacagc
gtgccttatccgctgcccgccaacaaaaccatcagcaccttcaagtccctcagttcaccc
ggcggcgccggcttcaacgaactgcgagtcgaagacaaaaaagcccaggagcagattttt
atccacgctgagcgcgattgggatcaagagatcgagcacgaccagaaaatcaccgtgctc
aacgagcgtcacgacacggttaccgccaacagctacagcgagttcaaagccgaagaacat
cgcaccacgcatgcggatcgcaaggtggagataaaaaccgatgatcatttaagcgttggc
caggatcagcacatcaaactcggcgtcgcccaactgagccacgcaggcagtgaaatacac
atacaagcgggacaaaaaatagtcatcgaagccggcgctgaaatcaccctcaaagccggc
cccagttttatcactattagcgcgtcgagcatcaaagcggtggggccaaccatccggctc
aatgccggtggcagcccaagcagtgggcgaggggctacaccggtgctgccggggcaggtg
gagactgcggatagtgctgaggcgggcagattgttaactatcgcacaaggaaacgcgttg
ttaagggagaagccggtatgcctcgtatgtgcagcggcagagcaggaggctcgtaaagat
gcagtttga

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