Planococcus sp. Y42: B0X71_00255
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Entry
B0X71_00255 CDS
T04763
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmar
Planococcus sp. Y42
Pathway
pmar03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B0X71_00255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmar03400
]
B0X71_00255
Enzymes [BR:
pmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0X71_00255
DNA repair and recombination proteins [BR:
pmar03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
B0X71_00255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
RecG_dom3_C
IstB_IS21
MFD_D3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AQQ51719
UniProt:
A0A1Q2KU57
LinkDB
All DBs
Position
52086..55613
Genome browser
AA seq
1175 aa
AA seq
DB search
MEPILQSFTTEEAIRTFLGDLKNGKDRQLISGLSGSARPVLYKAVQKELGKPLLVVAPTL
FHAQRVYEDLVRLAGDESVRLYPADELLAAELAFSGPELRSQRIETLDHMANGGTGIYVT
SLAGLRKHLPKPGRWAAFSLFAEEGGEVDAGKWLQKLVAMGYERAGMVTTPGEFALRGGI
LDIYPLTSEHPVRIELFDTDVDSIRTFSAEDQRSLDKLKTIHVLPATEFILEQTDREQLA
ERLEEQLGMTLRNVKNDEVKQALLKFVRHDVELLKEGNMPEQGTKYAALTEGQTAFLTDY
FPSDGLVFLDEIGRIQETEESLDRQENEMAVSLLEEGEFVHGIQLAHSFRDCLDRMDQQV
TFLSLFARSFSGMQLKKTVNFSCKPMQAFHGQMNLLKSEFDRWQQGNFQLFITARGDDRM
DKVQAVLADYEMEAARWTPDTRLQDGKAYIVDGELSAGFELPLQRLAVITDAELFKQQGK
KRKRRPQKLSNAERIKSYSEIKPGDYIVHAHHGIGRYIGIETLEVNGNHKDYLHIRYRAD
DKLYVPVDQIDLVQKYVASEEREPKLHKMGGAEWKKTKSKVSAAVKDIADDLIKLYAERE
SKKGFAFSEDQELQSQFEAEFPYEETDDQLRSIHEVKRDMEKERPMDRLLCGDVGYGKTE
VAIRAAFKAVLDGKQVAFLVPTTILAQQHYETMKDRFKDYPVEIGLLNRFRTKKEQAETT
KGLKTGTVDIVVGTHRLLSKDVVYQDLGLLVVDEEQRFGVTHKEKIKQLKTNVDVLTLTA
TPIPRTLHMSMVGVRDLSVIETPPADRYPVQTYVMESNGGLVREAIEREMARGGQTFYLY
NRVDDMTRKVSEIQELVPEARVGHAHGQMSETELESVILSFLDGEYDVLVTTTIIETGID
IPNVNTLIIHDADKMGLSQLYQLRGRVGRSNRVAYAYLLHERDKVLTDVAEKRLHAIKEF
TELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFGLYSQMLQEAVEEKQTGTPKEAVP
EVEISLDTDAYIPDSYIPDGYQKIQMYKRIKGIDTAEEMEELQDEMIDRFGDIPLEVDQL
LRIARMKVWARTARAFSIKQNGQYTEIRLTQEGSKSIDGGKLMQDTAVFGKAVGFQVNGQ
ELVLRIDEKKIAKNHPFDVLESVMKMLPDSLRNAA
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggagccgatactacagtcatttacaacagaggaagccatccggacatttctgggagac
ctgaaaaacggaaaggaccgtcagctcatttcaggcttgtccggcagcgcccgtcctgta
ttatataaagccgtccagaaagagcttggaaaaccattgctggttgtcgcaccgaccctg
tttcacgcacagcgggtttatgaagatctcgtgcggcttgccggtgatgaaagtgtccgg
ctttacccggcggatgaattgctggcagccgaacttgcattttcgggtcctgaattgcgt
tcccagcgaattgaaacactcgatcatatggcgaatggcggaacgggaatatatgtaacg
tcgctggccgggctcagaaaacatttacctaaacccggacgctgggctgctttttctcta
tttgcagaagaaggcggagaagtggatgcgggtaaatggcttcagaaattagtcgcaatg
ggatacgagcgggccggcatggtcacgacacctggagagtttgccctgcgtggcggcatt
ctggacatttatccgcttacatctgaacatccggtgagaattgaactatttgatacagat
gttgattcaatccgtacattttcagctgaagaccaacgctcacttgataaactgaaaact
attcacgttcttccggcgacggaatttattctggaacagacggacagagagcagcttgca
gagcgactcgaagagcaattgggaatgacattgagaaacgtaaaaaatgacgaggtaaaa
caagccctcttgaaatttgtccggcatgatgttgagctgctgaaggaagggaatatgccg
gaacagggaacaaagtatgctgcccttacggaaggacagacggccttcttgactgattat
tttccatcagatggtttggtgtttctggatgaaattggacgaattcaggaaaccgaagaa
tcactcgaccgccaagaaaatgaaatggcggtatcgcttctggaagaaggggaatttgtg
catggcattcaacttgcccattctttccgagattgcttggatcgaatggaccagcaggtg
acattcctgtccctgttcgcccgctcattctcaggcatgcagctgaaaaaaaccgtgaat
ttctcctgtaaaccgatgcaggcattccacggtcagatgaatttgctgaaaagtgaattt
gatcgctggcagcaagggaatttccaactctttattacggctcgcggcgatgacagaatg
gataaagtgcaggcggtgctggcagactatgaaatggaagcggcacgctggacgccggat
acccgactgcaggacgggaaagcctatatcgtagatggtgaattgtctgccggattcgag
cttccgcttcagcgactggctgttattacagatgcagaactgttcaaacagcaaggcaaa
aagcggaaaagacggccgcagaagctgtcaaacgcagagcgcattaagagctattcggag
atcaaaccaggcgattatattgtacacgcacatcatgggatcggccggtatatcggtatt
gaaacacttgaagtaaacggcaatcataaagattatttgcatatccgttaccgggctgat
gacaaattatatgttccggtcgaccagatcgatcttgttcagaagtatgtcgcttcagaa
gagcgggaaccgaagcttcataaaatgggcggcgctgagtggaagaagacgaaatcgaaa
gtatccgctgcagtcaaggacattgcagatgatctgatcaagctgtatgcggaacgggag
tcaaagaaagggttcgctttctcggaagaccaggaactgcaaagccagtttgaagcggag
tttccatacgaggaaacagatgatcaattgcgctcgattcatgaagtcaaacgggatatg
gaaaaagagcggccgatggatcgcctgttatgcggagatgtcggatacggaaaaacagaa
gtggcgatccgggcggcttttaaagcagtattggatggcaaacaagtagcctttcttgtc
ccgacaactatacttgctcagcagcattacgaaacgatgaaagaccgcttcaaggattat
ccggtcgaaataggtttgctgaaccgtttccgcacaaagaaagagcaggcagaaaccaca
aaaggattgaaaacaggaacagttgatattgtcgtcggtacgcatcgcttgttgtcgaag
gatgtggtatatcaggatcttggtctgctcgtcgtcgacgaagagcagcgattcggtgtg
acgcacaaggaaaaaatcaaacagctaaaaacgaatgtggatgttctgacgctgacagct
actccgattccgcgtacccttcacatgtccatggtcggtgtccgggacttgtctgttatt
gagacaccaccggctgatcggtatccggtgcagacgtatgttatggaatcgaacggcggt
cttgtccgggaagcgatcgagcgggaaatggcacgcgggggtcagacattctatttatat
aaccgggtggacgatatgacccggaaagtaagtgaaattcaggaacttgtcccggaagcc
cgtgtgggacacgcgcatggacagatgtcggagacagaacttgagtcggtcatcctgagt
tttctggacggggaatatgatgtgctggtgacaacaaccattattgagaccggtattgat
attccaaacgtcaatacgttgatcattcacgatgcagataaaatggggctttcccaattg
tatcagctgcgggggcgtgtcggacgttcaaaccgggtggcttatgcctacctgctgcat
gaacgtgataaagtgctgacagatgttgctgagaaacggttgcacgccatcaaggaattt
acggaactcggatccggctttaaaatcgccatgcgggatctatccatccggggagccgga
aacctgcttggctcacagcagcacggcttcattgattctgttgggtttggtctgtattcg
caaatgcttcaggaagcagtcgaagaaaaacaaacaggcacaccaaaagaagcagtgcct
gaagttgagatttcactcgataccgatgcgtacattccagacagttatattccggatggt
taccagaagatccaaatgtacaagcggatcaaaggaatcgatacggccgaggaaatggaa
gagctgcaggatgaaatgattgaccggttcggagacataccgcttgaagtggatcaattg
ctccgaattgcccgtatgaaagtctgggcacgcactgcccgggcattttccataaagcaa
aacggccaatatacggaaatccggctgacccaggagggctccaagtcaattgatggcgga
aaattgatgcaagacacagctgtttttggcaaagctgtcggtttccaggtgaatggtcag
gaacttgtcttgcggattgacgagaaaaaaatagcgaagaaccatccgttcgatgtgctt
gaatctgttatgaaaatgctgcctgactcactccggaatgcggcatag
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