Planococcus sp. Y42: B0X71_02680
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Entry
B0X71_02680 CDS
T04763
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmar
Planococcus sp. Y42
Pathway
pmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0X71_02680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmar03019
]
B0X71_02680
03009 Ribosome biogenesis [BR:
pmar03009
]
B0X71_02680
Enzymes [BR:
pmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B0X71_02680
Messenger RNA biogenesis [BR:
pmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0X71_02680
Ribosome biogenesis [BR:
pmar03009
]
Prokaryotic type
rRNA helicases
B0X71_02680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
GRP
Helicase_RecD
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AQQ54969
UniProt:
A0A1Q2L3G1
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All DBs
Position
497016..498440
Genome browser
AA seq
474 aa
AA seq
DB search
MGFEEATPIQEGTIRLGLEGNDIIGQAQTGTGKTAAFGIPMIEKIDTKSSDIQGLIIAPT
RELAIQVSEELYKLGRDRNVRILSVYGGQEIGRQIRALKNRPHIIVGTPGRIQDHINRRT
LKLDNVNTLVLDEADEMLNMGFIDDIKAILTSVPAERQTLLFSATMPDAIRRIAEQFMKS
PEVVKIKSKEMTVENIEQFFVKAPEREKFDVLSRLLNIQQPELAIVFGRTKRRVDELSQA
LSLRGYLAEGIHGDLSQAKRLSVLKQFKSNKIDVLVATDVAARGLDISGVTHVYNFDIPQ
DPESYVHRIGRTGRAGKKGVAVTLVTPREMGYLRIVEDTTKKRMLPLRPPSSDEALLGQQ
KLAVGTLEEMVAKNSLDDYRAFAENLLENHEAVDLIAAALKTMTREPDDTPVSISEERPL
PQRGGKGGRSGGGGYKGNKGGGGYKGNKGGRSGGYKGGGRSSSDRGGSRPRRSE
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgaagaagcaacaccaattcaggaagggacaatccgtctcggtcttgaaggg
aacgatatcatcggacaggcacagacagggacaggcaagacagctgctttcggtattccg
atgattgaaaaaatcgatactaagagttcggatatccaggggcttatcattgcgccgacg
cgtgagctagcaatccaggtatctgaagagctgtacaagctgggacgcgaccgcaatgtc
cgcatcctgtctgtatacggcggccaggaaatcggccggcagatccgtgcactgaaaaac
cgtccgcatatcatcgttggtacaccaggccgtattcaggatcatatcaaccgccgtacg
cttaagctcgataacgttaacacgctcgtgctggatgaagcggatgaaatgctgaacatg
ggctttatcgacgatatcaaagcgattctgacaagtgtcccggcagaacgccagacactg
ctgttctctgcaacaatgccggatgcaatccgccgcattgcagaacaattcatgaagagt
ccggaagtcgttaaaatcaaatcaaaagagatgacagttgaaaacatcgagcagttcttt
gtcaaagcaccggagcgcgaaaaattcgatgtgctttcccgcttgctgaacattcagcag
ccggaattggcaatcgtttttggacgcacaaagcgccgggtggatgaactgtcacaagcg
ctgtcacttcgtggataccttgctgaaggaattcacggtgacttgagccaggcaaaacgt
ttatctgtactgaagcaatttaaatcaaacaaaatcgatgtgctggttgctactgacgta
gcagcacgcggacttgatatttcaggcgtaacacatgtgtataactttgatatcccgcag
gatccagagagctatgtacaccggatcggccgtaccggccgtgcaggtaaaaaaggtgta
gcggtcacattggtgacaccgcgtgaaatgggttacctccgcatcgttgaagatacgacg
aaaaagcgcatgttgccacttcgtccaccttcatccgatgaagcgcttctcggtcagcag
aaacttgctgtcggaacgctggaggaaatggtcgcaaaaaatagcctggatgattaccgg
gcatttgcagagaatctgcttgaaaaccacgaagcagtggacctgattgcagctgcatta
aaaacaatgacaagagaaccggatgacacgccagtctccatctctgaagaacgcccgctt
ccacagcgcggcggaaaaggcggccgcagcggtggcggcggctataaaggcaataaaggc
ggcggcggttacaaaggcaataaaggcggtcgcagcggcggctataaaggcggcggacgt
tcctcttctgacagaggcggcagccgaccacgccgttctgaataa
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