Planococcus sp. Y42: B0X71_03390
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Entry
B0X71_03390 CDS
T04763
Name
(GenBank) recombinase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pmar
Planococcus sp. Y42
Pathway
pmar03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmar00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0X71_03390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmar03019
]
B0X71_03390
03400 DNA repair and recombination proteins [BR:
pmar03400
]
B0X71_03390
Enzymes [BR:
pmar01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
B0X71_03390
Messenger RNA biogenesis [BR:
pmar03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0X71_03390
DNA repair and recombination proteins [BR:
pmar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B0X71_03390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DUF559
Motif
Other DBs
NCBI-ProteinID:
AQQ52248
UniProt:
A0A1Q2KVK3
LinkDB
All DBs
Position
632292..635567
Genome browser
AA seq
1091 aa
AA seq
DB search
MEKFTANYCYSNSNFIIAGLPAKKVIHEHTNLCNVVQNLICRGNPTIASDFLRNEFGLKR
KYIEELAEVKFLSNEDLDWERSIKGDDGNFDYPALQFYDDLKQILNSAGFIRNLVCAEYP
ITEILPDTSQEFAKQQVDFYIPLMKTVIEVDGNGHKNQLELDKKRDIALRKEGIDVIRIS
TKEIRQRDYARFKNEFREIYKKYIDKIKQYEYALNADQSQFKIQQGLSTIARFQVFVLEL
LDRGVLSLSSPAWQFQVKEDNDRQLLKLALKDLNYWIQNVASLFNTRVSLPKTLISISKK
NQQKAEDKGVIRIDQNLCKRWDDEVQEEGLYFIRTDFDDEANYFKLKTNETVVYSLSAET
HGRNLRFLLANLFGFQDFNGGQLEIIINCLNGQDTIGLLPTSGGKSLTYQLCVLLQPAIS
FVVVPIKSLMVDQIENLKQKHHITHASYINGDLKSREASERLNAFSEGKYSFMVISPERF
QMQGFRDELETINRKSALALAVIDEVHCLSEWGHDFRTSYLALANTIRKYAPSTRFLALT
ATASSKVLKDVMSELEISSKDVVTISSFTRPELKFDIMPVTKKNRKESLVEVLRSISATH
AESDQKGPTVVFTQVVNGKEGCYELSHLAEIAANVRTGYYSGSQPKKYTGRSYTEDKDRT
QRMFMNDEIDSLFATKAFGMGIDKANIRHTIHYGIPNSLESFYQEAGRAGRDKYPSRCLV
LYTKDDLTPFQEKALFSLETNTAAIEKARKEVSGDLSTLLFFMKENLMEVEREAQQITAF
YDKNIANKKGTVRIGFGQKEDAEKMIYKLALIGIVEDWTNDWRSRHYEVELADWTEASVI
GKLSEHIRKYDYGFSVSENQLTASDEPFVKKVLLILLQWYNDNIIYSRKRSMLLMKQVAD
EFTDSESLQKRIETYFKRNDDVYFLENTAAKKEKIKDWYRVFYVQEEGKEDVPRAINSID
ELEITLGRFLESYRDDISLNLISGFVQLVKNNFESVDGRARMGAAVTRIVQMEDKDRQEM
IGSILKISDLYLNDGQKQELSNTLISNGLNQMADLKLIHRRLQDEFSYGSMVKELYSVIK
ERAGGGYPWEM
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggaaaaattcacagcaaactattgttactcgaattcaaatttcatcattgccggcttg
cccgccaagaaagtcatacacgagcacactaatctgtgtaacgtcgtgcaaaatttgatt
tgtagaggcaaccctacaatcgcatctgacttcttacggaatgagtttgggttgaaacgg
aagtatatcgaggaattggcggaagtgaagttcctttctaatgaggatctggattgggaa
cgttcaatcaaaggtgatgatggcaattttgattacccggcgttgcagttttatgatgac
ctaaaacagattttgaattcagccggttttatccgaaacttggtctgtgctgaatatccg
ataactgaaattctgcctgacacaagccaagagttcgcgaaacaacaagtcgatttctac
attccgttaatgaaaacggtcattgaagtggatgggaacgggcataagaatcagctggag
ttagataagaaacgggatatagcgctacgaaaagaaggaattgacgtaatccggatttcc
acaaaggaaatcagacagcgggattacgcacggttcaaaaatgagttcagagaaatttat
aagaagtacatagataagattaaacaatatgagtatgcgctgaatgcagatcagagccaa
ttcaagattcagcaaggtctatcaactatcgcaaggtttcaggtatttgtgttggaactt
ctcgataggggtgtcttgtctctttccagtccggcatggcaattccaagtcaaggaagat
aacgatcgacaattgttgaagcttgccctgaaagacttgaattactggatacagaacgta
gcttcattgtttaacacgcgagtttcactgccaaagactttaatcagtataagtaagaaa
aatcaacaaaaggcggaagacaaaggtgtaatccggattgaccaaaatttatgcaagcgg
tgggatgatgaagttcaggaagagggcctctactttatccggacggattttgatgatgaa
gcgaattacttcaagctgaaaacgaatgaaactgttgtttactcgctcagcgcggaaaca
catggccgtaacttacggtttctattggcaaacctttttggtttccaggatttcaatggc
ggccagctggagatcatcatcaattgtttgaatggtcaagataccatcgggctccttccg
acaagcggcggaaaatccttaacgtatcaattatgtgttttacttcagcctgcgatcagt
tttgtagtggtaccgataaaatcattgatggttgaccagattgagaatctgaagcagaaa
catcatattacgcatgccagttacataaacggagatttaaaatcccgcgaagcctcggag
cgattgaatgcattctcggaaggaaagtattcctttatggtgatctcgccggagcggttc
caaatgcaagggttccgtgatgagctcgaaacgattaaccggaagagcgcattggcgctg
gcggttattgatgaagtgcattgcttatcagaatgggggcatgacttccggacatcttat
ttagctcttgcaaatacgatcagaaaatacgcgccttccacgagatttttggcgcttact
gcgacagcttcatcaaaagtacttaaagatgtgatgagtgagttggaaatttccagtaaa
gatgtcgttaccatctcttcattcactagaccggaacttaaattcgacattatgcctgtc
accaaaaagaatagaaaagaatcattagtggaagtgctgaggtccatttctgcgactcat
gcggagagcgaccaaaaaggaccgactgtcgtcttcacgcaagtggtaaatggaaaagag
ggttgttatgaattaagccatttagcggaaatagctgccaatgtcagaacaggctattat
tcaggaagccagcctaaaaagtacacgggtcgttcttatacggaagataaagaccggaca
caaagaatgttcatgaatgatgaaatcgattccttgtttgccacaaaagcgtttggtatg
ggcattgataaagcaaacatcaggcataccatccactacggtattccgaattctctcgaa
tcgttttatcaagaggccggacgggccgggagagataaatatccttccagatgtcttgtt
ctttatacaaaggacgacctcactccttttcaggaaaaagcattattcagtctcgaaacg
aatacagctgcaattgaaaaggcaaggaaagaagtttccggcgatttgagcaccctcttg
tttttcatgaaagagaacttaatggaagttgaacgggaagctcaacagattacagccttt
tatgataaaaacatcgctaataaaaaaggtacggtgagaatcggatttggccaaaaagaa
gatgcggaaaaaatgatctataagctggcgttgatcggaatagtagaagattggaccaat
gattggagaagcaggcattatgaggtcgagctggctgactggacagaagcatcagtcatc
gggaaactgtcggaacatatacgaaagtacgactacggcttttccgtctcagaaaaccaa
ttgacagcaagtgatgaaccatttgtcaaaaaagtccttctcattcttcttcagtggtac
aacgacaatatcatttattccagaaaaagatccatgttgttaatgaaacaagtggcagat
gaatttaccgatagtgaatcgctccagaagagaattgagacatattttaaacgcaacgat
gatgtttatttcctggaaaatacagcagctaaaaaagaaaagattaaggattggtatcga
gttttctatgttcaggaggaaggaaaagaggatgtgcctcgggctataaattctatcgat
gagcttgaaattacacttggccgcttccttgaaagttaccgggatgatatcagcttgaat
ctaatttcagggtttgttcagctagtgaagaataattttgaatctgtggatggaagagcg
cgaatgggtgcagcggtaacgagaattgttcaaatggaagacaaggacagacaggaaatg
atcggttcaattttaaagatttctgacctgtatctaaatgatggacaaaagcaagagcta
agcaacaccttgatcagcaacgggctcaaccaaatggctgatttaaaattgatccatcgg
cggcttcaggatgaattcagttatggaagcatggtgaaagagctctattctgtcataaaa
gagagagcgggagggggatacccatgggaaatgtag
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