Pelagerythrobacter marinus: NCF86_05970
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Entry
NCF86_05970 CDS
T08297
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pmas
Pelagerythrobacter marinus
Pathway
pmas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCF86_05970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmas03019
]
NCF86_05970
Enzymes [BR:
pmas01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NCF86_05970
Messenger RNA biogenesis [BR:
pmas03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NCF86_05970
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UTP25
AAA_19
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
USA40698
LinkDB
All DBs
Position
complement(1189920..1191356)
Genome browser
AA seq
478 aa
AA seq
DB search
MTFDQLGLSQPVLQALDLKGYNTPTPIQAQAIPPVLEGRDLLGIAQTGTGKTAAFMLPSI
DRLREAGRQTPFKSCRMLVLAPTRELAGQIAQSAKDYGALAGLKVQSIVGGTSVNKDRNK
LHRGTDILVATPGRLLDLIDQKAFGLGAVEILVLDEADQMLDLGFIHALRKISQLVPEDR
QTLFFSATMPGQIKELVGKYCHEPVHVSVTPESTTAERIDQYLFMVQQDEKQALLEMILR
GRHAVPGKIERVLVFTRTKHGADRVVKKLAQAGVPANAIHGNKSQPQRERALGEFRSAKT
PVLVATDVAARGIDIPGVSHVVNYELPNVPEQYVHRIGRTARAGRDGIAIAFCAEDERAY
LKDIRKTTDAEFERLALPDNFRAVVEGVGPTKPAARQPRQRVQPKPRGGEGAPRSAQAGQ
AQPGKKHPGRAGKPRRDGGKPAHGGSASAERAQGQGRGQGHGGGKRPSRNRNRRRQGR
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgatcaactcgggctgtcgcagcccgtcctccaggcgctcgacctgaagggt
tacaacacgcccacgccgatccaggcgcaggccattccccccgtgctcgaagggcgcgac
ctgctgggcatcgcccagaccggcaccggcaagacggcggccttcatgctgcccagcatc
gaccggctgcgcgaggcggggcggcagacgccgttcaagtcgtgccgcatgctcgtgctc
gcgccgacgcgcgagctggccgggcagatcgcccagtcggccaaggactacggcgcgctc
gcgggcctcaaggtgcagtcgatcgtcggcggcacttcggtcaacaaggaccgcaacaag
ctgcaccgcgggaccgacatcctcgtcgccacgccgggccgcctgctcgacctgatcgac
cagaaggccttcggcctcggcgcggtcgagatcctcgtcctcgacgaggcggaccagatg
ctcgacctcggcttcatccacgcgctgcgcaagatcagccagctcgtgcccgaagaccgg
cagacgctgttcttcagcgccacgatgccgggccagatcaaggagctggtgggcaagtac
tgccacgagccggtccacgtttcggtcacgcccgagagcacgaccgcggaacggatcgac
cagtacctgttcatggtccagcaggacgagaagcaggccctgctggagatgatcctgcgc
gggcgtcacgcggtcccgggcaagatcgagcgggtcctggtcttcacccggaccaagcat
ggcgcggatcgcgtggtgaagaagctcgcccaggcgggcgtgcctgccaacgcgatccac
ggcaacaagagccagccgcagcgcgaacgcgcgctgggcgagttccgctcggcgaaaacg
ccggtgctggtggcgaccgacgtcgccgcgcgcgggatcgacattcccggcgtcagccac
gtcgtgaactacgagctgccgaacgtgccggaacaatacgtccaccggatcggccgcacc
gcgcgcgccgggcgcgacggcattgccatcgccttctgcgccgaggacgagcgcgcctat
ctgaaggatatccgcaagaccaccgatgcggaattcgaacggctcgccctgccggacaat
ttccgggccgtggtcgaaggcgtcgggccgaccaagccggccgcgcgccagccgcgccag
cgcgtccagcccaagccgcgcggcggcgagggggcgccgcgctctgcccaggcaggccag
gcgcagccgggcaagaagcacccggggcgcgcgggcaagccgcggcgcgacgggggcaag
ccggcccacggcggctcggcttcggccgagcgggcccagggccagggcaggggtcagggc
cacggcgggggcaagcgcccttcgcgcaaccgtaaccggcggcgccaggggcgctga
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