Pelagerythrobacter marinus: NCF86_10915
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Entry
NCF86_10915 CDS
T08297
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pmas
Pelagerythrobacter marinus
Pathway
pmas03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pmas00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NCF86_10915 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmas03021
]
NCF86_10915 (rpoC)
03400 DNA repair and recombination proteins [BR:
pmas03400
]
NCF86_10915 (rpoC)
Enzymes [BR:
pmas01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NCF86_10915 (rpoC)
Transcription machinery [BR:
pmas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NCF86_10915 (rpoC)
DNA repair and recombination proteins [BR:
pmas03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NCF86_10915 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Peptidase_M23
RPOC_hybrid
YqfD
Blo-t-5
Motif
Other DBs
NCBI-ProteinID:
USA38816
LinkDB
All DBs
Position
complement(2209409..2213731)
Genome browser
AA seq
1440 aa
AA seq
DB search
MNELTKFTNQLAKPETFDQIQIGIASPERIRSWSFGEIKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRMKYKGVVCEKCGVEVTVTKVRRERMGHIELAAPVAHIWFLKSL
PSRIGLLLDMQLKQLERVLYFEAYIVTEPGLTPLEKFQLLTEDELLEAQDEYGEDAFTAG
IGAEAVKNMLMDLDLEQERADLLEELETTKSKLKPAKIIKRLKVVESFIESGNRPEWMIL
EVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRML
QEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGP
ELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREH
PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE
ARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMDREGEPGEGMVLADMAEVHQALHV
GAVTLHSKIVSRVPQADENGEIAMKRFETTPGRMLIGECLPKSHKVPFDIVNRLLTKKEI
GDVIDQVYRHTGQKDTVLFADAIMSLGFRHAFRAGISFGKDDMIIPGEKEKLVEETKALV
ADYEQQYQDGLITQQEKYNKVIDAWSRCGDQVADAMMEMIKARPKDENGREAEINSIYMM
SHSGARGSPAQMKQLAGMRGLMAKPSGEIIEQPIISNFKEGLTVLEYFNSTHGARKGLAD
TALKTANSGYLTRRLVDVSQDCVIVEDDCKTENSLEMRAIVQGGSVIASLGERILGRTVA
EDILDASSGEVIVKAGTLLDEAMVKTIEDAEVQVAKIRSPLVCEAEQGVCARCYGRDLAR
GTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNETSHLEAVSDGKVVYRDMPTI
TDKKGRILSLARNGELAVIDAEGREREIHKVPYGTVLMFEDGAQVKEGDRLAEWDPFTLP
IITEQSGVVRYQDLVDGTTMEERVDEATGIAQRVVTELRTSGRKKKEDLRPRLTLLGEEG
KKGEETEAARYMLAPGTSLSVEDGQQVEAGDILARASREAAKTRDITGGLPRVAELFEAR
VPKDNAIIAKISGKIEFVREYKAKRKIAIVPEEGDPVEYLIPKTKVIDVQEGDLVKKGDT
LISGSPNPHDILEVLGVEALAEYLVNEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDG
GDTTLLPGEQVDLGEMNEVNARLAKGKKPAEGTPILLGITKASLQTRSFISAASFQETTR
VLTQAAVEGKKDTLVGLKENVIVGRLIPAGTGAAMNRARVTASSRDAALRATWKKQQEAL
LAAQTAAEEREAELAQGSEAALGDDPLARVEGETHGTDADAGEYLQQGEEGEASKPAEGE
NT seq
4323 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaactgaccaaattcaccaaccagctcgcgaagccggaaaccttcgaccagatc
cagatcggcatcgccagccccgagcgcatccgttcctggtcgttcggcgagatcaagaag
ccggaaacgatcaactaccgcacgttcaagcccgagcgcgacgggttgttctgcgcgcgc
atcttcggcccggtgaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagtac
aagggcgtcgtgtgcgagaagtgcggcgtcgaagtgaccgtgaccaaggtccgccgcgag
cgcatgggccatatcgagctggccgccccggtcgcgcacatctggttcctcaagtcgctg
cccagccgcatcggcctgctgctcgacatgcagctcaagcagctcgagcgggtgctctac
ttcgaggcctatatcgtcaccgagccgggcctgaccccgctcgagaagttccagctgctg
accgaggacgagcttctcgaggcgcaggacgaatatggcgaggacgccttcaccgccggc
atcggtgccgaagcggtgaagaacatgctgatggacctcgacctcgagcaggaacgcgcc
gacctgctggaagagctggaaacgacgaagtcgaagctcaagccggccaagatcatcaag
cgcctgaaggtcgtcgaaagcttcatcgaatcgggcaaccggcccgagtggatgatcctc
gaagtcgtgccggtcatcccgcccgaactgcgcccgctggtgccgctcgacggcggccgt
ttcgcgacctcggacctcaacgacctctatcgccgcgtcatcaaccgcaacaaccggttg
aagcgcctgatggaactgcgcgcgccggacatcatcgtccgcaatgaaaagcgcatgctg
caggaagcggtcgatgcgctgttcgacaacggccgccgcggccgcgtgatcaccggcgcc
aacaagcgcccgctcaagtcgctcagcgacatgctcaagggcaagcagggccgcttccgc
cagaacctgctcggcaagcgcgtcgactattcgggccgttcggtcatcgtgaccggcccg
gagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaagccg
ttcatctacgcccgcctcgacgccaagggtctgtccatgaccctcaagcaggcgaagaag
tgggtcgagaaggagcgcaaggaagtctgggatatcctggatgaagtgatccgcgagcac
ccggtcctgctcaaccgcgcgccgacgcttcaccgcctcggcatccaggcgttcgagccg
gtgctgatcgaaggcaaggcgatccagctgcacccgctggtctgcgccgcgttcaacgcc
gacttcgacggcgaccagatggccgtccacgtcccgctgagcctcgaggcgcagctggaa
gcgcgcgtgctgatgatgtccaccaacaacatcctcagtcccgccaacggcaagccgatc
atcgtgccgtcgcaggacatggtcctgggcctctattacctgtcgatggaccgcgagggc
gagccgggcgagggcatggtcctggccgacatggccgaagtgcaccaagcgctgcacgtc
ggcgcggtcacgctgcactccaagatcgtcagccgcgtcccgcaggccgacgagaacggc
gagatcgcgatgaagcggttcgagacgaccccgggccgcatgctgatcggcgaatgcctg
ccgaagagccacaaggttccgttcgacatcgtcaaccgcctgctgaccaagaaggaaatc
ggcgacgtcatcgaccaggtctatcgccacaccggccagaaggacacggtgctgttcgcc
gacgcgatcatgtcgctcggcttccgccacgcgttccgcgccggcatctcgttcggcaag
gacgacatgatcatcccgggcgagaaggaaaagctggtcgaggaaaccaaggcgctcgtc
gccgactacgaacagcagtaccaggacggtctgatcacccagcaggaaaagtacaacaag
gtgatcgacgcctggagccgctgcggcgaccaggtggccgacgcgatgatggaaatgatc
aaggcccggccgaaggacgagaacggccgcgaggcggagatcaactcgatctacatgatg
agccattcgggcgcgcgtggttcgcccgcccagatgaagcagctcgccgggatgcgcggc
ctgatggccaagccgtcgggcgagatcatcgaacagccgatcatctcgaacttcaaggaa
ggcctgaccgtccttgaatacttcaactcgacccatggtgctcgtaaaggtctcgccgac
accgcgctcaagacggcgaactcgggctacctgacccgccgcctggtcgacgtgtcgcag
gactgcgtgatcgtcgaagatgactgcaagaccgaaaacagcctcgaaatgcgcgccatc
gtgcagggcggctcggtgatcgcctcgctcggcgagcgtatcctgggccggaccgtggcc
gaggatatcctcgatgcgtcgagcggcgaagtcatcgtcaaggcgggcaccctgctcgac
gaggcgatggtgaagacgatcgaggatgccgaagtgcaggtcgccaagatccgttcgccg
ctggtctgcgaggcggaacagggcgtctgcgcccgctgctacggccgcgacctggcgcgc
ggtacgccggtcaacatcggcgaggcggtcggcgtgatcgccgcccagtcgatcggcgag
ccgggcacgcagctgacgatgcggaccttccacatcggcggcgccgcgcagctcaacgaa
acctcccacctcgaggcggtgtcggacggcaaggtcgtctatcgcgacatgccgaccatc
accgacaagaagggccggatcctgtcgctcgcccgcaatggcgagctggccgtgatcgac
gccgaagggcgcgagcgcgagatccacaaggtgccctacggcaccgtcctgatgttcgag
gacggggcccaggtgaaggaaggcgaccgcctggccgagtgggacccgttcaccctgccg
atcatcaccgagcagtcgggcgtcgtgcgctaccaggacctggtcgacggcacgacgatg
gaagagcgcgtggacgaagccaccggcatcgcgcagcgcgtggtgaccgagctgcggacc
agcggccgcaagaagaaggaagacctgcgcccgcgcctcaccctgctgggcgaggaaggc
aagaagggcgaggaaaccgaggccgcgcgctatatgctcgcccccggcacttcgctctcg
gtcgaggacggccagcaggtcgaggcgggcgacatcctcgcccgcgcctcgcgcgaagcc
gccaagacgcgcgacatcaccggcggtctgccgcgtgttgccgagctgttcgaagcgcgc
gtgccgaaggacaacgcgatcatcgccaagatctccggcaagatcgagttcgtccgcgag
tacaaggccaagcgcaagatcgcgatcgttcccgaggaaggtgatccggtcgagtacctg
atccccaagaccaaggtgatcgacgtccaggaaggcgacctcgtcaagaagggcgacacc
ctgatctccggctcgcccaatccgcacgacatcctggaagtcctgggggtcgaggcgctg
gccgagtacctcgtgaacgagatccaggaagtctatcgactgcagggcgtgaagatcaac
gacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatcaccgatggc
ggcgacaccacgctgctgccgggcgaacaggtcgacctgggcgagatgaacgaggtcaac
gccaggctggccaagggcaagaagccggccgaaggcacgccgatcctgctcggcattacc
aaggccagcctgcagacccgcagcttcatctccgccgcgtcgttccaggaaacgacccgc
gtgctcacccaggcggccgtcgaaggcaagaaggacacgctggtcggcctgaaggagaac
gtgatcgtgggccgtctcatccccgccggcaccggcgcggcgatgaaccgggcgcgcgtc
accgcctccagccgcgacgcggccctgcgggcgacgtggaagaagcagcaggaagcgctg
ctcgccgcgcagaccgccgccgaagagcgcgaggccgaactggcccagggctcggaggcc
gcgctgggcgacgatccgctggcccgggtcgagggggaaacccacggcaccgacgcggat
gcgggcgaatacctgcagcagggcgaagagggcgaggcgagcaagccggccgaaggcgaa
taa
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integrated database retrieval system
