Pelagerythrobacter marinus: NCF86_11080
Help
Entry
NCF86_11080 CDS
T08297
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pmas
Pelagerythrobacter marinus
Pathway
pmas02020
Two-component system
pmas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmas00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NCF86_11080 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCF86_11080 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmas03021
]
NCF86_11080 (rpoN)
Transcription machinery [BR:
pmas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCF86_11080 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
Sigma70_r4
Arg_repressor
HTH_3
Motif
Other DBs
NCBI-ProteinID:
USA38848
LinkDB
All DBs
Position
2254592..2256040
Genome browser
AA seq
482 aa
AA seq
DB search
MALAPRLDLRQTQSLVMTPQLQQAIKLLALSNLEIETFIGDALEANPLLEAGEVAREDGE
TAPAGESEPAADSAAGDESALDIDPGALDRDRDTGDGEWGAAHGATPAGELPSIDERGGD
GPTLAEHLAEQVGAAAGDSREAFVARHLVGLLDEAGYLATDLHEVAAELGIPVAEAERAL
AVVQSLDPTGVGARSLGECLALQAREADRYDPCMARLIDNLDLVARGEFARLKRMCEVDD
EDFADMLAELRGYDPKPGCRFGGAGEAAIVPDILVTAARDGGWDIALNEETLPRLVVNRA
YYLELRRGCAGKEAQSWLGEKLADANWLIRALDQRQKTILKTAAEIVKKQEGFFRAGVSE
LRPLTLRDVAEAIDMHESTVSRVTSNKYLNCDRGTFELKYFFTSGVGSADGEGASSQAVK
ARIKALIDAEDAKKILSDDTLVALLKGEGFDIARRTVAKYREAMGIGSSVQRRRQKRLAA
GG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggcgctggccccccgcctcgatctgcggcagacgcagtcgctggtcatgacgccgcag
ctccagcaggcgatcaagctgctggcgctgtcgaacctcgagatcgagactttcatcggc
gacgcgctggaggccaacccgctgctggaagcgggcgaggtcgcgcgggaagacggcgag
acggcccccgcgggcgaaagcgaacccgccgccgacagcgccgcgggcgacgagagcgcg
ctcgacatcgatcccggcgcgctcgaccgcgaccgcgataccggcgacggcgaatggggc
gcggcgcacggggcgacgccggccggcgagttgccctcgatcgacgagcgcggcggcgac
ggcccgaccctggccgaacatctcgccgaacaggtcggggccgcggccggcgacagccgc
gaggccttcgtcgcgcggcacctcgtcggcctgctcgacgaggccggctacctcgccacg
gacctgcacgaggtggcggccgaactgggcattcccgtggccgaggcggagcgcgccctg
gccgtcgtgcaatcgctcgatcccaccggggtcggcgcgcggagcctcggcgaatgcctc
gccctccaggcgcgcgaggcggaccgctacgatccgtgcatggcccggctgatcgacaac
ctcgacctggtcgcgcgcggcgagttcgcccgcctcaaacggatgtgcgaagtcgacgac
gaggacttcgccgacatgctggccgaactgcgcggctacgatcccaagcccggctgccgg
ttcggcggcgcgggcgaggccgcgatcgtgcccgatatcctggtcaccgccgcgcgcgac
ggcgggtgggatatcgcgctgaacgaggagaccctgccgcgcctggtcgtcaaccgcgcc
tattatctcgagctgcgccgcggctgcgcggggaaggaggcgcagtcctggctgggcgag
aagctggccgatgccaactggctgatccgcgcgctcgaccagcggcagaagacgatcctc
aagaccgcggccgaaatcgtgaagaagcaggaagggttcttccgcgctggcgtatccgag
ctgcgcccgctgaccctgcgcgacgtggccgaggcgatcgacatgcacgaaagcacggtc
agccgggtgacgagcaacaagtacctgaactgcgaccggggcacgttcgaactgaaatac
ttcttcaccagcggcgtcggcagcgccgatggcgaaggtgccagttcgcaggcggtcaag
gcgcggataaaggcgctgatcgacgcggaggacgcgaagaagatcctgtcggacgacacg
ctggtcgccctgctgaagggcgaagggttcgacatcgcccgccgcacggtggccaagtat
cgcgaggcgatgggcattggcagctcggtccagcgccggcggcagaaacggctggcggcc
ggcggctag
DBGET
integrated database retrieval system
