Pelagerythrobacter marinus: NCF86_13860
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Entry
NCF86_13860 CDS
T08297
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
pmas
Pelagerythrobacter marinus
Pathway
pmas03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pmas00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCF86_13860 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmas03400
]
NCF86_13860 (ligD)
Enzymes [BR:
pmas01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCF86_13860 (ligD)
DNA repair and recombination proteins [BR:
pmas03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCF86_13860 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
USA39353
LinkDB
All DBs
Position
2806557..2809106
Genome browser
AA seq
849 aa
AA seq
DB search
MSKRDPLAEYNRKRDFAKTAEPAGKRASGEGGNRFIVQKHAATRLHWDFRLEADGVLKSW
AVTKGPCPDPDVKRLAVRTEDHPMSYADFEGTIPKGEYGGGTVMLWDRGTWAPVEGKSWK
DIEKGHLHFTLDGERMKGEWLLVRMKKKPGEKRENWLLRKIDDEHAEPGDMLVERELTSV
LTGRAMAQIAADKQGEHSLEGKSGAAFAKEMAKAGEHNAKKAPKTRKKPARKGGAGKPPP
FRKLQLATLVDAVPAGNGWMHEIKFDGYRALVAAAGGTVRVHTRSGKDWSEKFAPLARAF
AALDLPPCLIDGEIVAYDTAGNPDFSSLQRVLKRGHGAQGEGDRLAFHAFDLLEADGEDL
AGLPNVERKERLEALLDGVEAPIHVADHVIGAGEKLYRAMCEAAQEGIISKAIDAPYRGS
RTRNWVKVKCTLRQEFVIVGWKASSAKGRPFASLLLAQHEGAGEDARLVYKGNVGTGFSH
ETLEDLAAKMKRLERKTPPVEVDRASARQVTWVTPKLVAEIAFSEFTADGNVRHGSFLGL
RSDKDADEVRPEKADPAPAGEAAQDVEISSRERVIFPDAKCTKGDLADYYADVAPLMLPF
AGQRPVSLVRCPQGRAKKCFFQKHDSGSFGPHVRHVPIAEKKGGTEDYLYLEDAAGLLAC
VQMGTIEFHGWGARSGDVERPDRMIFDLDPDEGLDFADVKQAAQDLRRKLADIGLTSHAM
LTGGKGVHVVVPLTPGHSWDAHKDFARRFAEALSMAEPDRFTATMSKAKRKGKIFIDWLR
NQRGSTAVVPYSARAREGAPVAAPIAWGELKSFDDAKPFTIADAAKLHARAKSKSLAGWG
FAEQRLPDI
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaagcgcgatcccctggctgaatacaaccgcaagcgcgatttcgcgaagaccgcc
gaaccggcgggcaagcgcgcgagcggcgaaggcggcaaccgcttcatcgtccagaaacat
gccgccacccggctccactgggatttccggctcgaagccgacggcgtgctcaagtcgtgg
gccgtgaccaagggcccgtgccccgatcccgacgtcaagcgcctcgccgtgcggaccgag
gaccacccgatgtcctacgccgatttcgaaggcacaatccccaagggcgaatacggcggc
ggcacggtcatgctgtgggatcgcggcacctgggcgccggtcgagggcaagagctggaag
gatatcgagaagggccacctgcacttcacgctcgacggagagcggatgaagggcgaatgg
ctgctcgtccggatgaagaagaagccgggcgaaaagcgcgagaactggctcctgcgcaag
atcgacgacgaacatgccgaacccggcgacatgctggtggagcgcgagctgacgagcgtg
ctgaccggccgcgcgatggcgcaaatcgccgccgacaagcagggcgagcactcgctcgaa
ggcaagtcgggcgcggctttcgcgaaggagatggcgaaggcgggcgaacacaacgcgaag
aaggcgccgaaaacgaggaagaagccggcgcgcaagggcggcgcgggcaagccgcccccc
ttccgcaagctgcagctggcaacgctggtcgatgccgtgcccgcgggcaatggctggatg
cacgagatcaagttcgacggctatcgcgcgctggtcgccgcggccggcgggacggtgcgc
gtccatacccgcagcggcaaggactggagcgagaagttcgccccgctcgcgcgcgctttc
gccgcgctcgacctgccgccctgcctgatcgacggcgaaatcgtcgcctacgataccgcg
ggcaatcccgatttctcctcgctccagcgcgtgctcaagcgcgggcacggcgcgcagggg
gaaggcgacaggctcgccttccatgccttcgacctgctcgaagccgatggcgaggacctg
gccggcctgcccaacgtcgagcgcaaggaacggctggaggcgctgctcgacggggtcgag
gcgccgatccacgtcgccgaccacgtgatcggcgcgggggagaagctctaccgcgcgatg
tgcgaggccgcgcaggaagggatcatctcgaaggcgatcgacgccccctatcgcggcagc
cgcacgcgcaactgggtcaaggtcaagtgcacgctgcgccaggaattcgtgatcgtcggg
tggaaggcgtcgagcgcgaaaggccgcccgttcgcctcgctcctcctcgcccagcacgag
ggggcgggcgaggatgcgcggctggtctacaagggcaatgtcggcaccggtttctcgcac
gagacgctggaagacctggcggcgaagatgaagcggctggagcgcaagacgcccccggtc
gaggtcgatcgcgcctccgcccgccaggttacctgggtgacgccgaagctggtcgcggaa
atcgccttcagcgagttcaccgccgacggcaacgtgcgccacggcagcttcctcggcctt
cgcagcgacaaggacgcggacgaggtccggccggagaaggccgacccggcccccgcgggc
gaggccgcgcaggacgtcgagatctcgagccgcgagcgggtgatcttccccgatgcgaaa
tgcacgaagggcgatctcgccgattactacgccgatgtcgcgccgctgatgctgcccttt
gcgggccagcgcccggtcagcctcgtccgttgcccccaggggcgggcgaagaagtgcttc
ttccagaaacacgacagcggatcgttcggcccccacgtcaggcacgtgccgatcgcggag
aagaaaggcgggaccgaggactatctctatctcgaggatgccgcgggcctgctcgcctgc
gtgcagatgggcacgatcgagttccacggctggggcgcgcgcagcggcgatgtcgagcgg
cccgaccggatgatcttcgatctcgacccggacgaggggctcgatttcgccgacgtgaaa
caggccgcgcaggacctgcgccgcaagctcgccgatatcggcctgaccagccacgcgatg
ctgaccgggggcaagggcgtgcacgtcgtcgtgccgctgaccccgggccattcgtgggac
gcgcacaaggacttcgcccgccgcttcgccgaggcgctgagcatggccgagcccgaccgc
ttcaccgcgacgatgagcaaggcgaagcgcaaggggaagatcttcatcgactggctgcgc
aaccagcgcggcagcaccgcggtcgtcccctattcggcgcgcgcgcgcgaaggggcgccg
gtggccgcgccgatcgcctggggcgagttgaaatcgttcgacgatgccaagccgttcacg
atcgccgacgcggcgaagctgcacgcgcgcgcgaagtcgaaatcgctcgccgggtggggc
tttgccgaacagcgcctgcccgacatctga
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