Pelagerythrobacter marinus: NCF86_16045
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Entry
NCF86_16045 CDS
T08297
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pmas
Pelagerythrobacter marinus
Pathway
pmas02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pmas00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NCF86_16045 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pmas03021
]
NCF86_16045 (rpoD)
Transcription machinery [BR:
pmas03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NCF86_16045 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
USA41343
LinkDB
All DBs
Position
plas1:complement(196536..198380)
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVQRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAETNNNTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEEMDDDEDEDEEEDDDSSDDDNSIDPELAREKFAELRTQYELTRDTIKAKG
RSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRIMMDRVRTQERIIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLLDVKEDVQRGLMKLQQIEQETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDNTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtccaacgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgactccgaccag
atcgaagacatcatccaaatgatcaacgacatgggcattcaggtgatggaagaagcaccg
gatgccgatgatcttttgcttgctgaaacgaacaacaatactgacgaagatgcggaagaa
gctgcggcgcaggttctctccagcgtggagtctgaaatcggacgcacaaccgacccggtg
cgcatgtacatgcgtgaaatgggtaccgtcgaactgctgacgcgcgaaggcgaaatcgac
atcgctaaacgtatcgaagacgggattaaccaggttcagtgctcggtggctgaataccct
gaagcgatcacttatctgctggagcagtacgatcgcgttgaagcggaagaagcgcgtctg
tccgatctgatcaccggctttgtcgacccgaacgctgaagaagatctggcgccaacagcc
actcacgtcggttctgaactctctcaggaagagatggatgacgacgaagacgaagatgaa
gaagaagacgacgacagcagcgatgacgacaacagcatcgaccctgagctggcgcgcgag
aaattcgccgagctgcgcacgcagtacgaactgacccgcgacaccatcaaagcgaaaggt
cgtagccacgccgcagcgcaggaagagatcctcaagctgtccgaagtgttcaaacagttc
cgtctggtaccgaagcagttcgattacctggttaacagcatgcgtatcatgatggatcgc
gttcgtactcaagaacgtatcatcatgaagctgtgcgttgagcagtgcaaaatgccgaag
aaaaacttcatcactctgttcaccggcaacgaaaccagcgaaacctggttcaatgcggcc
atcgccatgaacaagccgtggtcagagaagctgcttgacgtcaaagaagacgttcagcgc
ggcctgatgaaactgcagcagattgaacaagagaccggcctgaccatcgagcaggtaaaa
gatatcaaccgtcgtatgtccatcggtgaagcgaaagcgcgccgtgcgaagaaagagatg
gttgaagcgaacctgcgtctggttatctcgatcgccaagaaatacaccaaccgcggtctg
cagttcctcgatctgatccaggaaggcaacatcggtctgatgaaggcggttgataagttt
gaataccgccgcggctacaagttctccacctacgcaacctggtggatccgtcaggcgatc
acccgctctatcgcagaccaggcgcgcaccatccgtattccggtgcatatgattgagact
atcaacaagctcaaccgtatttcccgccagatgctgcaggagatgggccgcgagccgacg
ccggaagagctggcagaacgcatgctgatgccggaagacaaaatccgtaaggtgctgaaa
atcgccaaagagccgatctccatggaaacgccgattggcgacgatgaagattcgcatctg
ggagattttatcgaggataacaccctcgagctgccgctggactctgccaccaccgagagc
ctgcgcgccgccacccacgacgttctggctggcctgaccgcccgtgaagcgaaagtcctg
cgtatgcgctttggtatcgacatgaataccgatcacacgctggaagaagtgggtaaacag
tttgacgtaacccgcgaacgtattcgtcagattgaagcgaaggcgctgcgtaaactgcgc
catccgagccgttctgaagtgctgcgtagcttcctcgacgattaa
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