Planococcus maritimus: BBI11_01145
Help
Entry
BBI11_01145 CDS
T06704
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pmat
Planococcus maritimus
Pathway
pmat03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pmat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BBI11_01145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pmat03400
]
BBI11_01145
Enzymes [BR:
pmat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BBI11_01145
DNA repair and recombination proteins [BR:
pmat03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BBI11_01145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
UB2H
AAA_22
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
ANU15769
LinkDB
All DBs
Position
58824..62357
Genome browser
AA seq
1177 aa
AA seq
DB search
MKHILQAFLGDSHTQSFINELKKGQDHQLISGLSGSARPIFYQTVHEELDKPLLVVTPNL
LHAQRVYDDLVRLMGEQRVRLYPAEETIAADIAFSGPELRAHRIDTLDHMKSTGTGIYVT
PVSGLRKLLPSPAQWDGATLRVEDGDELDTESWLLKLVAMGYSRTTMVTSPGEFALRGGI
LDVYPLHFEHPVRIELFDTEVDSIRLFSAEDQRSLEKIHSLCILPAVELVLSAGQKRMLA
DRIEDQLSASLKKLKDDDTKELMMQYIQNDIDTLRSGDEPEQLAKYAALVDSQSAFLGDY
FPNDGVVFFDELGRIQEMTETLEREEAEWTVSLLEEGKFLHDVQLAYPFREVLAKLQQPA
NFLSLFTRTFPLVTIKKSLAYSCKPMQSFHGQMNLLQAEMERWTLGKFQVFVVASGEERL
QKVRSVLDDYDMEAEIITAATELQDGKTYLVDGELSSGFEMPLQRMAVITDAELFKKQPK
KKTRAQKLTNAERIKSYSEIKPGDYIVHIHHGIGRFIGIETLESGGVHKDYLHIVYKGDD
KLFVPVDKIDLVQKYIASEEKEPKLHKMGGVEWKKTRTKVSAAVQDIADDLIKLYAEREA
LEGFTFSEDQDMQRQFETEFPYEETPDQLRSIDEVKKDMERKRPMDRLICGDVGYGKTEV
AIRAAFKAVLDGKQVAFLVPTTILAQQHFETMSERFKDYPIEVGLMSRFRSKKQQTETVK
GLKNGSVDIVVGTHRILSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQLKSTVDVLTLTAT
PIPRTLHMSMIGVRDLSVIETPPANRFPVQSYVMENNGGLVREAIEREMARGGQVFYLYN
RVSDMSRKVDEIQQLVPEARVGYAHGQMSETELESIILGFLDGEYDVLVTTTIIETGIDI
PNVNTLIVYDADRMGLSQLYQLRGRVGRSSRVAYAYFMYQRDKVLTDVAEKRLMAIKEFT
ELGSGFKIAMRDLSIRGAGNLLGSQQHGFIDSVGFDLYSQMLEEAIEERRTGMKKEVVPE
VEISLAEDAYIPDSYIADGYQKIQMYKRVKNMETAEEMRDLQDELIDRFGDVPMEAEQLL
RIARMKVWARAAGADSIKQQGDRVTVKLSDAGTEAIDGGKVVEASGSYGRAVGFTMSGQA
LVLTIDGKKTGKHHPFDVLEGMMEILADSVREEASVG
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatattttgcaggcatttttaggggattcccatactcaatcatttatcaacgaa
ctgaagaaaggccaggaccatcaattgatttctggattatctggcagcgcccggcctatt
ttttaccaaacggtccatgaagagctggacaagccgctgcttgtcgtaacgccgaattta
ctgcatgcccaaagagtctatgacgatttggtccggctgatgggggagcagcgtgtccgg
ttgtatccggcagaagaaacgattgcggcggatattgccttttcaggtccggaactgcgc
gcccatcggatcgatacgcttgatcacatgaaatcgaccggtacaggcatctacgtgacg
ccggtttcgggcttgcgtaaattgctgccatccccggcacaatgggacggggcgacttta
cgtgtagaagacggagacgagctcgatacggaaagctggctattgaagcttgtcgcaatg
ggctattcccgtacaaccatggtgacttctcctggagaattcgccttgcgcggcggcatt
ttggatgtctacccgctgcactttgagcatccggtacgcatcgagctcttcgatacagaa
gtggattccattcgcttgttttcggcggaagatcagcgctcactcgaaaaaatacactct
ttgtgcattttgccagccgtcgaattggttttgtcggcagggcagaagcgaatgcttgca
gaccgcatcgaagaccaactatcggcgagtctgaagaaactcaaggatgacgatacgaaa
gagttgatgatgcaatacatccaaaacgatatcgacacgctcagaagcggcgatgagcct
gaacagttggcgaaatatgccgccttggtcgattcgcaatccgcttttctcggcgattat
ttccctaatgacggcgtggtgtttttcgatgaacttggacgcatacaggaaatgaccgaa
acgctagaacgcgaagaagcggagtggacggtgtcgcttcttgaagaaggcaaatttctc
cacgatgttcagctagcgtacccattccgggaagtgttggcgaagctccagcagccggcc
aatttcctgtcgctctttacgcggacatttccactcgtcacaatcaaaaaatcgcttgcc
tactcttgcaagccgatgcaatcgttccacgggcagatgaatttattgcaagccgaaatg
gaacgctggacgctcggcaagttccaagtatttgtcgtggccagcggcgaagagcgactg
caaaaagtacgttctgtgctggatgattacgacatggaagcggaaattattacggccgct
actgaattgcaagatggcaaaacctatttggttgatggggagttgtccagtggctttgag
atgccactgcagcgaatggctgtcattacggatgcagaactcttcaaaaagcagccgaag
aaaaaaacccgcgcccaaaaattgaccaatgccgagcgcatcaagagctattcggagatt
aagcctggggattacatcgttcacatccaccacggcatcggccgctttatcggcattgaa
acactcgagagcggcggcgttcataaagattatttgcacattgtttataaaggtgacgat
aaactatttgtgcccgtcgacaaaatcgacctcgtccagaaatacatcgcttcggaagaa
aaagagccgaagctccataagatgggcggcgttgaatggaagaagacgcgcacgaaagta
tcggccgctgtccaggacattgccgatgatttgatcaaactgtacgcagaacgcgaagcg
ctcgaaggctttacgttcagtgaagaccaagacatgcagcgccaatttgaaacggagttc
ccttacgaggaaacgcctgaccaattgcgctcgattgacgaagtgaaaaaagacatggag
agaaaacgcccgatggaccgcttgatctgcggcgatgttggctatggcaaaacggaagtc
gccattcgtgcggcatttaaagcggtgctagacggcaagcaagtagcattccttgtgccg
acgaccattctcgcccagcagcatttcgaaacgatgagcgagcgtttcaaggattaccca
attgaagtgggcctcatgagccgcttccgttcgaaaaaacagcaaaccgaaacagtcaaa
gggctgaaaaacggatcggtcgacatcgttgtgggcacgcaccgcattttatcaaaagat
gtcgtctataaagatcttggcttattgatcatcgatgaagaacagcgttttggggtgacc
cataaagaaaagatcaagcaattaaaatcgacggtggacgtcttgacgttgacggcgacg
ccgattccgcgcaccttgcatatgtcgatgatcggtgtacgcgacttatccgttatcgaa
acgcctcctgccaaccgattcccggtacaaagctacgtcatggaaaataacggcgggctc
gtgcgcgaagcgatcgaacgtgaaatggcgcgcggcggacaagtattttatttgtacaac
cgagtcagcgatatgagccgcaaagtagatgagatccagcagcttgtgccggaagctcgc
gtcggctatgcgcatgggcagatgtctgagaccgaactcgaatcgatcattctcggcttt
ctcgacggcgagtacgacgtcttagtgacgacgacgattatcgaaaccggcatcgacatc
ccgaacgtcaacacgctcatcgtctatgatgccgatcgcatgggcttgtcgcagctttac
caattgcgtgggcgcgtcgggcgctcgagccgcgtggcctatgcctatttcatgtaccaa
cgtgacaaagtgctgaccgatgttgcggaaaaacgcttgatggcaatcaaagaatttacc
gaactcggctcaggctttaaaatcgccatgcgcgatttgtcgatccgcggggcgggcaat
ttgctcggctcccagcaacacggctttatcgattccgtcggtttcgatttgtattcacaa
atgctcgaagaagcaatcgaggaacgccgaaccggcatgaagaaagaagtcgtgccagaa
gtggaaatctcgctggcagaagatgcctatattccagacagctatattgctgatggctac
caaaagattcaaatgtacaagcgcgttaaaaacatggaaacagcagaagaaatgcgcgat
ttgcaggatgaattaatcgaccgtttcggtgatgtgccgatggaagccgaacaattgctg
cgcattgcccgtatgaaagtctgggcgcgcgctgccggtgccgactccattaaacagcaa
ggagaccgcgttacggttaaattaagcgatgccggaacagaagcaatcgatggcgggaaa
gtcgtcgaagcttccggcagctacgggcgtgccgtcggctttacgatgagcggccaggca
ctcgtattgacgatagacggcaaaaaaaccggcaagcatcatccattcgatgtgcttgag
ggcatgatggagattctggcggattctgtcagggaagaggcgtctgtcgggtga
DBGET
integrated database retrieval system
