Planococcus maritimus: BBI11_10595
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Entry
BBI11_10595 CDS
T06704
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pmat
Planococcus maritimus
Pathway
pmat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBI11_10595
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmat03019
]
BBI11_10595
Messenger RNA biogenesis [BR:
pmat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BBI11_10595
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ANU17441
LinkDB
All DBs
Position
complement(1928319..1929986)
Genome browser
AA seq
555 aa
AA seq
DB search
MSKIKNEVIRVIPLGGVGEIGKAMYVIDIDDDLFVVDSGLMFPEDEMLGVDIVIPDVTYL
EENKDRVKGIFLTHGHEDAIGSIAYLLKKVQAPVYGSKLTIALAKEHVKELGSLKHHKFF
EVTNKSRMNFDKTHVTFFHTTHSIPDALGIVFHTSEGAIVHTGEFKFDQSMQGSYRPDYA
KMAKLGEDGVLMLLSDSTEAERPGYTTSETVVADHILTAFHQAPGRILVSLYSSNFIRIQ
QVFDIAQQTGKKVAVIGKSLEKSYEVGLRLGYLEVDEETVISLKDMEKYNDDEVVIIVTG
NQGEPLEALDKMVRRQHKDVRINETDTVLITFTPSPGMEVPMFQTMNKLAKAGAKVLTSN
KKVHVSGHGSQEDLKMMLNLMKPKYFVPIQGEYKMLIAHSKLAQQVGIAKSDIFIADKGD
IVEYRKEKVRMSGRVTTGNVLIDGIGIGDVGNIVLRDRKLLSQDGIFIIVVTLNRKEKRI
ASGPEIISRGFVYVRESEQLLEESSQLVRKVVDKYVTRDAFEWNNIKQEIRDTLNSYLYQ
QTKRRPMIIPIIMEY
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaaaattaaaaacgaagtcattagagtcattccgcttggcggagtaggagaaatc
ggcaaagccatgtacgtcatcgatatcgatgatgacttgtttgttgtcgacagcgggttg
atgttcccggaagatgagatgcttggcgtcgacatcgtcattccggacgtcacttatctt
gaagaaaacaaagaccgtgtgaaagggatcttcctgacgcatggccacgaggatgcaatc
gggtcgattgcttatctattaaagaaagtccaagcgccggtttatggctcgaagctgacc
attgcgcttgctaaagagcacgtaaaagagcttggctcgctcaaacatcataaattcttt
gaagtcaccaataagagccgcatgaattttgacaaaacacacgtcacctttttccatacg
acacacagcattccagatgcactcggaattgttttccatacatcagaaggcgcgattgtc
catactggggaattcaaatttgaccagtcgatgcaaggcagctaccgcccggattatgcc
aaaatggcaaaactcggtgaagacggggtattgatgctcttgtcggattccactgaagcg
gaacgcccaggctacacgacgtctgagacagtcgtagctgaccatatcttgacggcattc
caccaagcgccgggccgaattcttgtatcgctttattcatccaacttcatccgcatccag
caagtgttcgacattgcgcaacaaaccggtaaaaaagtagctgtcatcggcaaaagccta
gagaagagctatgaagtcggcttgcgccttggttatcttgaagtggatgaagagaccgtc
atttctctgaaagatatggaaaaatacaacgatgatgaagtggtcatcatcgtaacaggc
aaccaaggtgaaccgttagaagcgcttgacaaaatggtcagacgccagcataaagacgtg
cgcattaacgaaacggatacggtgttgatcacgttcacgccgtcgccaggcatggaagtg
ccaatgttccagacgatgaacaaattggctaaagctggcgcgaaagtattgacgtctaat
aagaaagtccacgtttccgggcacggcagccaggaagacttaaaaatgatgctgaacttg
atgaagccgaagtatttcgtgccgattcaaggagaatataaaatgctcattgctcattcc
aagttggctcagcaggtcggaatcgcaaaatcggatatcttcattgccgataaaggcgat
atcgtcgaatacagaaaagagaaagtccgcatgagcggccgtgtgacgacaggcaatgtc
ttgatcgatggaatcggcatcggggacgtcggcaatatcgtcctgcgtgaccgcaagctc
ttgtcgcaggatggaatctttattatcgtcgttaccttgaaccgtaaggaaaaacgcatt
gcatcaggtcctgaaatcatttccagaggttttgtctatgtccgcgagtcggagcaattg
cttgaggagtcgagtcaattggtgcgcaaagtcgtcgataaatacgtgacgcgcgatgca
tttgaatggaacaatatcaaacaggaaatccgcgatacgctgaattcgtatctgtaccag
caaacgaagcgacgtccgatgatcattccaatcatcatggaatactaa
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