Planococcus maritimus: BBI11_15140
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Entry
BBI11_15140 CDS
T06704
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pmat
Planococcus maritimus
Pathway
pmat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BBI11_15140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmat03019
]
BBI11_15140
03009 Ribosome biogenesis [BR:
pmat03009
]
BBI11_15140
Enzymes [BR:
pmat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BBI11_15140
Messenger RNA biogenesis [BR:
pmat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BBI11_15140
Ribosome biogenesis [BR:
pmat03009
]
Prokaryotic type
rRNA helicases
BBI11_15140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
UvrD-helicase
AAA_19
AAA_30
Helicase_RecD
SWI2_SNF2
Motif
Other DBs
NCBI-ProteinID:
ANU18288
LinkDB
All DBs
Position
complement(2875520..2876965)
Genome browser
AA seq
481 aa
AA seq
DB search
MNTKQFKDYGISEPIVKALAGLGYQEPTEVQQQVIPAALGKQDLTVKSQTGSGKTAAFGI
PLCELVDWDENKPQVLVLTPTRELADQVKEDITHIGRFKRIKAAAIYGKHPFAYQKEELK
QKCHIVVGTPGRVLDHIEKGTLKLDKIEYLVLDEADEMLNMGFIEQVESIIKQLPKQRTT
MLFSATFPGHLEKLQRDFMRSPRYIGIQAADTLEERIEHSLVIVKEQDKFQLLRDVTVVE
NPDSCIVFCRTKDQVDAVSEGLERLFYTSDQLHGGMTQEDRFGVMDDFRRGEFRYLVATD
VAARGIDIDGITHVINYDFPLEKESYVHRAGRTGRAGKSGKAISFVTPFEDKFLKETEDY
LGFEITRVERPSREQVALAKPAFEDKIESRQKPKKHKAAALNQDIMKLYFNGGKKKKLRA
VDFVGTLTSIPGITAEDIGIIKIQDTVTYIDILNGKGLHVLKAMKEKTVKGKTLKVHKAK
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaacacgaaacaattcaaagattacggtatcagcgaaccgattgtaaaagcgctggca
ggattgggctatcaagaaccaactgaagtccaacagcaagtcatcccggcggctcttgga
aaacaagatttgactgtcaaatcgcaaacgggcagcggcaagaccgcggcattcggcatt
ccactgtgcgaactggtcgattgggatgaaaacaagccgcaggtactggtcctgactcca
acgcgcgaacttgccgatcaagtgaaagaagatatcacccatatcggccgcttcaagcgc
atcaaagctgccgctatttatggcaagcatccatttgcgtatcaaaaggaagaattgaag
caaaaatgccatattgtcgttggtacgccgggacgcgtactcgaccatatcgaaaaaggc
acgttgaagctcgacaaaattgagtacctggtgctcgatgaagctgatgaaatgctcaat
atgggttttatcgaacaagtggaatcgatcattaagcagcttccgaaacaacgaacgacc
atgctgttctcagcgacatttccaggccatctggagaaactgcagcgtgatttcatgcgt
tctccccgctatatcgggattcaggccgctgatactttggaagaacgcatagaacattca
cttgtaattgtcaaggaacaggataaatttcagttgctgcgcgacgtcaccgttgtggaa
aatccagatagctgcatcgttttctgccgtacgaaagaccaggtggatgctgtatcggaa
gggcttgagcgcttgttctatacgagcgaccaattacacggcggcatgacccaggaagac
cgtttcggcgtcatggatgattttcgccgcggtgagttccgttatttggtggcgacagac
gttgcagcgcgcggcatcgatatcgatggcatcacccatgtcatcaattatgatttcccg
ctcgagaaggaaagctacgtccaccgcgcggggcgtacaggacgcgctggcaagagcggc
aaggcgatttcattcgtcacgccattcgaagacaaattcttgaaggaaacagaagactat
ttaggatttgagattacgcgcgtagaacggccgtcgagagagcaggttgccttagcgaaa
ccagcattcgaagataaaatcgagagccgccagaaaccgaaaaaacataaagcggcggca
ctgaaccaagacatcatgaagctgtatttcaatgggggcaaaaagaaaaagctccgcgcc
gtcgattttgtcgggacactgaccagcataccgggcatcacggcggaagatatcggcatc
atcaaaatccaagacacggttacgtatatcgatattttgaatggcaaagggctgcatgtt
ttgaaggcaatgaaagaaaaaaccgtcaaaggcaaaaccttaaaagtgcataaagcgaaa
aaataa
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