Peromyscus maniculatus bairdii (prairie deer mouse): 102903043
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Entry
102903043 CDS
T11302
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage stimulation factor subunit 2 tau variant
KO
K14407
cleavage stimulation factor subunit 2
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102903043
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102903043
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
102903043
U7-dependent histone pre-mRNA processing factors
102903043
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
RRM_10
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
102903043
NCBI-ProteinID:
XP_042123656
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Position
23:complement(42917290..42920865)
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AA seq
641 aa
AA seq
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MSSLAVRDPAMDRSLRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYG
FCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLGPAAPIIDSPYGDPID
PEDAPESITRAVASLPPEQMFELMKQMKLCVQNSHQEARNMLLQNPQLAYAXMRIMDPEI
ALKILHHKIHVTPLIPGKSQPGPGPGPGGPGPSPGPGPGPVPAAAPGLCPGPNVMLNQQN
PPAPQPQHLPRRPVKDIPPLMQTSIQGGIPAPGPIPAAVPGPGPGSLTPGGAMQPQVGMP
VVGPVPLERGQMQMSDPRPPMPRGPMPAGGIPPRGLLGDAPNDPRGGTLLSVTGEVEPRG
YMGPPHQGPPMHHGHDSRGPSSHDMRGGPLAADPRMLIGEPRGPMIDQRGLPMDGRGGRE
SRGMETRPMETEVLESRGMERRMETCAMETRGMEARGMDARGLEMRGPGPSSRGPMTGGI
QGPGPINMGAGGPQGPRQVPNIAGVGNPAGDMQGAGIQGAGMQGAGIQGGGMQGAGMQGG
MQGADMQGGMQGAGMQGGMQGAGMQGGMQGAGMQGASKQGGGQPSSFSPGQSQVTPQDQE
KAALIMQVLQLTADQIAMLPPEQRQSILILKEQIQKSTGAS
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtttggcggtgcgagacccagccatggatcggtcactgcgttcagtgttcgtg
gggaacattccgtatgaggcgacggaggagcagttaaaggacattttctcggaggttggt
tccgttgtcagtttccgtctcgtatacgatagagagacaggaaagcccaagggttatggc
ttctgcgagtaccaagaccaggagactgcgcttagtgccatgcggaacctcaatgggcga
gagtttagtgggagggcgcttcgggtggacaatgcggccagtgagaagaacaaggaggag
ttaaagagcttgggcccggcagcgcccatcattgactcaccctatggggaccctattgat
ccagaagatgctccagaatcgattactagagcggtcgccagcctgccccccgagcagatg
tttgagctgatgaagcagatgaagttgtgtgtccaaaacagtcaccaggaagcccgaaac
atgctgcttcagaacccacaactggcgtatgccngtatgagaatcatggatccagagatt
gcactgaaaattctgcatcataagatacacgtcacaccgctgattccaggcaaatctcag
cctggccctgggcctggccctggtggtccgggccccagccctggccctggcccaggtccc
gtccctgccgccgcccctgggctctgccccggacctaatgttatgctgaaccaacagaat
cctccagctcctcagcctcagcatttgccaaggagacctgtgaaagacattcctcctctg
atgcagacttctatacagggaggaattccagctccggggccaataccagccgcagttcct
ggacctggacctggttcattaactccaggaggagcaatgcagccacaagttggcatgcca
gtggttggtccagtgcccttagagcgaggacagatgcagatgtcagatcctagacctcca
atgcctcgtggacccatgcctgctggtggcatacctcctcggggactcctgggagatgct
ccaaatgacccacgcggagggactttgctctcagttactggagaagtggaacccagaggt
tatatgggtccaccccaccagggtccccccatgcaccatggtcatgacagccgtggccct
tcttcgcatgatatgagaggagggccattagcagcagatcccagaatgctaattggagag
cccagaggtcccatgatagatcaaagaggtctgcctatggatggtagaggaggaagagag
tctcgagggatggagactcggcccatggaaactgaggtcttggagtcacgagggatggag
agaagaatggagacctgtgcaatggaaaccagaggcatggaagcaagaggcatggatgca
agaggactagagatgaggggccctggccctagttccagaggcccgatgactggtggaatc
cagggtcctggccccattaatatgggggcgggtggccctcagggacctagacaggttcca
aacattgcaggagtgggaaatcctgcaggtgacatgcagggggcaggtatacaaggagca
gggatgcagggagctggtatacaaggaggaggaatgcaaggagcaggcatgcaaggaggg
atgcagggagcagatatgcaaggagggatgcagggagcaggcatgcaaggagggatgcag
ggagcaggtatgcaaggagggatgcagggagcaggtatgcaaggagcgagtaagcaaggt
ggaggccagcctagcagttttagccctgggcaaagccaggtaactccacaagatcaagaa
aaagcagctttgattatgcaggttcttcagctaactgcagaccagatcgccatgctgcct
cctgagcaaaggcagagtatcttgattctaaaggaacaaatccagaagtccaccggtgct
tcctga
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