Peromyscus maniculatus bairdii (prairie deer mouse): 102905249
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Entry
102905249 CDS
T11302
Symbol
Rpa1
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit
KO
K07466
replication factor A1
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03030
DNA replication
pmav03420
Nucleotide excision repair
pmav03430
Mismatch repair
pmav03440
Homologous recombination
pmav03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102905249 (Rpa1)
03420 Nucleotide excision repair
102905249 (Rpa1)
03430 Mismatch repair
102905249 (Rpa1)
03440 Homologous recombination
102905249 (Rpa1)
03460 Fanconi anemia pathway
102905249 (Rpa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pmav03000
]
102905249 (Rpa1)
03032 DNA replication proteins [BR:
pmav03032
]
102905249 (Rpa1)
03400 DNA repair and recombination proteins [BR:
pmav03400
]
102905249 (Rpa1)
Transcription factors [BR:
pmav03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102905249 (Rpa1)
DNA replication proteins [BR:
pmav03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102905249 (Rpa1)
DNA repair and recombination proteins [BR:
pmav03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102905249 (Rpa1)
MMR (mismatch excision repair)
102905249 (Rpa1)
DSBR (double strand breaks repair)
HR (homologous recombination)
102905249 (Rpa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Ubiquitin_At1g33420
IBR
CATSPERD-E_C
Motif
Other DBs
NCBI-GeneID:
102905249
NCBI-ProteinID:
XP_006977444
Ensembl:
ENSPEMG00000021061
UniProt:
A0A6I9L6G7
LinkDB
All DBs
Position
8:complement(61061851..61115396)
Genome browser
AA seq
614 aa
AA seq
DB search
MVGHLSEGAIAAIMQQGDTSIKPILQVINIRPITTGNSPPRYRLLMSDGLNTLSSFMLAT
QLNPLVEGQKLASNCVCQVNRFIVNTLKDGRRVVILMNVEVVKSAEEVGIKIGNPVPYNE
GHGQQQVAPSPASAATPPASKPQPQNGSLGMGSTAAKAYGASKPFGKPAGTGLLQPSGGT
QSKVVPIASLTPYQSKWTICARVTNKSQIRTWSNSRGEGKLFSIELVDESGEIRATAFNE
QVDKFFPLIEVNKVYYFSKGTLKIANKQFSAVKNDYEMTFNNETSVLPCEDGHHLPTVQF
DFTGIGDLESKSKDSLVDILGICKSYEESTKITVKSTNREVAKRNIYLMDMSGKVVTATL
WGEDADKFDGSRQPVMAIKGARLSDFGGRSLSVLSSSTVIVNPDIPEAYKLRGWFDSEGQ
ALDGVSISDLKSGGAGGSNTNWKTLYEAKSENLGQGDKADYFSTVATVVFLRKENCMYQA
CPTQDCNKKVIDQQNGLYRCEKCDREFPNFKYRMILSVNIADFQENQWVTCFQESAEAIL
GQNTAYLGELKEKNEQAFEEVFQNANFRSFTFRIRVKLETYNDESRIKATVMDVKPIDYR
DYAKRLIMNIKRNM
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggtgggacacctgagcgagggggccattgcggccataatgcaacagggagatacatcc
ataaagcccatccttcaagtcattaacattcgtcccattactacagggaatagtccaccc
cggtatcgactgcttatgagtgatggattgaacacgctgtcctctttcatgttggccaca
cagctgaaccctcttgtcgagggacagaaactggccagcaactgtgtctgccaggtcaac
cgattcatcgtgaacaccctgaaagatggaaggagagtagttattttgatgaatgtggaa
gttgtaaaatcagctgaagaagttggaataaagattgggaatccggtgccctataatgaa
ggacacgggcagcaacaagtagccccttcaccagcctcagcagccacaccaccagccagc
aagccccagccgcagaatgggagcttgggaatgggttccactgcagctaaggcttatggt
gcctcaaagccatttggaaaacctgctggaactggcctgctacagccttcaggagggaca
cagtccaaagtggtgcccatcgccagcctcaccccttatcaatccaagtggactatttgt
gcccgtgtcaccaacaaaagtcagatccgtacctggagcaattcccgaggagaagggaag
cttttctctatagaactcgtagatgaaagtggtgaaatcagagcgactgctttcaatgag
caggtggacaagttctttcccctcatcgaagtgaacaaggtgtattatttctcgaaaggc
accctgaagatcgctaacaagcagttctcggctgttaaaaacgactatgagatgaccttc
aataacgagacttctgtccttccctgtgaagatggccatcacttacccaccgttcagttt
gatttcacagggatcggtgacctagagagcaagtctaaagactcacttgtagacatactc
gggatctgcaagagctatgaagagtccactaaaatcacagtgaagtctaccaacagagaa
gttgctaagagaaacatctatctgatggacatgtcagggaaagtggtgactgcaactctc
tggggagaagacgccgacaagtttgacgggtccaggcagcctgtgatggctattaaagga
gcccggctctctgactttggtgggcggagcctctctgtcctgtcgtctagcactgtcatt
gtgaatcctgacatcccagaggcctataagcttcgtggatggttcgactcagaaggacaa
gccttagacggtgtttccatctctgacctcaagagtggaggcgccggagggagcaatacc
aactggaagaccttgtatgaggctaaatcggagaacctgggccagggtgataaggcggac
tacttcagcaccgtggcgacggtggtgtttcttcgaaaagagaactgtatgtaccaggcc
tgcccaacccaggactgcaataagaaggtgattgaccagcagaatgggttgtaccgctgt
gagaagtgtgaccgggagttccccaacttcaaataccgcatgatcttgtcggtgaacatt
gcagattttcaagagaatcagtgggtgacgtgtttccaggagtctgcggaggctatcctt
ggacagaacactgcctacctgggggagctgaaagagaagaacgagcaggcgtttgaagag
gttttccagaatgccaacttccgatcatttacgttcagaatcagggtcaagctggagacc
tacaatgatgaatctcgaattaaggccactgtgatggacgtgaagcccatcgactacaga
gattatgccaaaaggctgatcatgaacatcaagaggaacatgtga
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integrated database retrieval system
