Peromyscus maniculatus bairdii (prairie deer mouse): 102905328
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Entry
102905328 CDS
T11302
Symbol
Col6a2
Name
(RefSeq) collagen alpha-2(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04151
PI3K-Akt signaling pathway
pmav04510
Focal adhesion
pmav04512
ECM-receptor interaction
pmav04820
Cytoskeleton in muscle cells
pmav04974
Protein digestion and absorption
pmav05165
Human papillomavirus infection
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
102905328 (Col6a2)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
102905328 (Col6a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
102905328 (Col6a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
102905328 (Col6a2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
102905328 (Col6a2)
09160 Human Diseases
09172 Infectious disease: viral
05165 Human papillomavirus infection
102905328 (Col6a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
pmav04147
]
102905328 (Col6a2)
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102905328 (Col6a2)
Exosome [BR:
pmav04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
102905328 (Col6a2)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102905328 (Col6a2)
Hyaluronan
Extracellular matrix or blood plasma proteins
102905328 (Col6a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102905328
NCBI-ProteinID:
XP_076414700
Ensembl:
ENSPEMG00000023614
LinkDB
All DBs
Position
21:12228026..12255293
Genome browser
AA seq
1026 aa
AA seq
DB search
MTTIKMFQGSFSVFLLGGILGVLRAQQQEVISPDPSIIDRNNNCPEKADCPVNVYFVLDT
SESVAMQSPTDSLLYHMQQFVPQFISQLQNEFYLDQVALSWRYGGLHFSDQVEVFSPPSS
DRASFTKSLQGIRSFRRGTFTDCALANMTQQIRQHVGRGVVNFAVVITDGHVTGNPCGGI
KMQAERAREEGIRLFAVAPNRNLNEQGLRDIANTPHELYRNNYATMRPDSTEIDQDTINR
IIKVMKHEAYGECYKVSCLEIPGPHGPKGYRGQKGAKGNMGEPGEPGQKGRQGDPGIEGP
IGFPGPKGVPGFKGEKGEFGSDGRKGAPGLAGKNGTDGQKGKLGRIGPPGCKGDPGSRGP
DGYPGEAGSPGEQGDQGAKGDSGRPGRRGPPGDPGDKGSKGYQGNNGAPGSPGVKGDKGG
PGPRGPKGEPGRRGDPGTKGGPGSDGPKGEKGDPGPEGPRGLAGEVGSKGAKGDRGLPGP
RGPQGALGEPGKQGSRGDPGDAGPRGDSGQPGPKGDPGRPGFSYPGPRGTPGEKGEAGPP
GPEGGRGDFGLKGAPGRKGDKGEPADPGPPGEPGPRGPRGVPGPEGEPGPPGDPGLTECD
VMTYVRETCGCCDCEKRCGALDVVFVIDSSESIGYTNFTLEKNFVINVVNRLGAIAKDPK
SETGTRVGVVQYSHEGTFEAIRLDDERVNSLSSFKEAVKNLEWIAGGTWTPSALKFAYNQ
LIKESRRQKTRVFAVVITDGRHDPRDDDLNLRALCDRDVTVTAIGIGDMFHETHESENLY
SIACDKPQQVRNMTLFSDLVAEKFIDDMEDVLCPDPQIVCPELPCQTELYVAQCTQRPVD
IVFLLDGSERLGEQNFHKARRFVEEVSRRLTLARRDDDPLNARMALLQYGSQNQQQVAFP
LTYNLTTIHEALERTAYLNSFSHVGAGIVHAINNVVRGARGGARRHAELSFVFLTDGVTG
NESLEESVHSMRKQNVVPTVVAVGSDVDMEVLTKISLGDRAAIFREKDFDSLAQPSFFDR
FIRWIC
NT seq
3081 nt
NT seq
+upstream
nt +downstream
nt
atgactactatcaagatgttccagggttctttttctgtgttcctgcttgggggcatctta
ggagtcctccgtgctcagcagcaggaagtcatctcacctgacccctccatcattgacagg
aacaacaactgtccagagaaggctgactgcccagtcaatgtgtacttcgtgttggacacc
tcggagagcgtggccatgcagtctcccacagacagcctactttatcacatgcagcagttc
gtacctcagttcatcagccagctgcagaatgaattctacctggaccaggtggcgctgagc
tggcgttacggtggtctgcacttctcggaccaggtggaggtgttcagccccccaagcagc
gaccgggcctccttcacaaagagcctccaaggcatccgctccttccgcagaggcaccttt
actgactgtgccctggccaacatgacccagcagatccggcagcatgtcggccgaggtgtg
gtcaactttgctgtggtcatcaccgacggccacgtcacgggcaatccgtgtggaggcatt
aaaatgcaggctgagcgtgcccgcgaggagggcatccggctctttgccgtggcccctaac
aggaacctaaatgaacaaggcctgagggacatcgctaacaccccacatgagctctaccgc
aacaactatgccaccatgaggcccgactctaccgagattgaccaggacaccatcaaccgc
atcatcaaggtcatgaaacatgaagcctacggagagtgctataaagtgagctgcctggag
attcctgggccccatggacccaagggctaccgcggacagaagggtgccaagggcaacatg
ggtgagccaggagagcctggacagaaggggagacagggagaccctggcatcgaaggcccc
attggattcccaggacccaagggtgtgcccggcttcaagggagagaagggtgaattcgga
tcagatggtcggaagggagcccccggcctagctggcaagaatggaactgatggacagaag
ggcaaactgggccgcattggacctcctggttgcaagggagacccaggaagccggggccct
gatggataccctggagaagccggaagcccaggcgagcaaggagaccaaggtgccaagggg
gactctggccgcccgggacgcaggggaccaccaggagaccctggagacaagggaagtaag
ggatatcaaggtaacaacggagctcctggaagcccgggagtgaaaggagacaagggagga
cctggcccccgtggaccaaaaggagagccggggcgcaggggagatcctggaaccaagggc
ggcccgggcagcgacggtccaaagggggagaagggtgaccctggtcctgaggggccccga
ggcctggctggagaagttggcagcaaaggagccaagggagacagaggtttgcctggaccc
agaggcccccagggggctcttggggagccaggaaagcagggatctcggggagaccccggt
gacgctggacctcgtggagattcaggacagccaggccccaagggagatcctggaaggcct
ggattcagctacccaggaccccgagggacacccggcgaaaaaggagaggctggcccacca
ggccctgagggaggccgaggagactttggtctgaaaggcgcacccggaaggaagggagac
aagggcgagccagctgatcctggtccccctggtgaacctggccctcgggggccaagagga
gtcccaggacctgagggagaacccggcccaccaggagaccctggtctcacggaatgtgac
gtcatgacctatgtgagagagacctgtggatgctgcgactgtgagaagcgttgtggtgct
ctggatgtggtcttcgtcatcgacagctctgagagtattggctacaccaacttcaccctg
gagaagaacttcgtcatcaatgtggtcaacaggctgggtgccattgccaaggaccccaag
tctgagacaggcacgcgtgtgggtgtggtgcagtacagccacgaaggcactttcgaggcc
atccggctggacgacgagcgagtcaactccctgtccagtttcaaggaggccgtcaaaaac
cttgagtggattgctggtggcacgtggacgccctctgccctcaagtttgcctacaatcag
ctcatcaaggagagcaggcgccagaagacccgggtgttcgcagtggtcatcacagatggg
cgccatgacccccgagacgacgacctcaacctccgggcactgtgtgaccgagacgtcact
gtgacagccatcggcatcggcgacatgttccatgagacacatgagagcgagaacctctac
tccattgcctgtgacaagccgcagcaagtgcgtaacatgacgctcttctctgacctggtg
gctgagaagttcatcgatgacatggaagatgtcctttgcccagacccccagatcgtgtgt
ccagaacttccctgccaaacagagctctatgtggcccagtgcacacagaggcccgtggac
attgtcttcctgctggatggctcggagcggttgggcgagcagaacttccacaaggcacgg
cgcttcgtggaggaggtgtcacggcgcctgactctggcgcgaagggatgacgacccactc
aatgcgcgcatggccctgctgcagtatggcagccagaaccagcagcaggtggccttcccg
ctgacctacaacttgaccaccatccatgaggcgctggaaagaactgcctacctcaattcc
ttttctcacgtgggcgcaggcatcgtgcatgccatcaacaatgtggtgcggggggcacgg
ggcggggcgcggcgtcacgcagagctctcctttgtcttcctcacggatggtgtcacgggc
aacgaaagcctggaggagtcggtgcactccatgcgcaagcagaatgtggtgcccaccgtg
gtcgccgtgggcagtgatgtggacatggaggtgctgaccaagatcagcctgggtgacagg
gcggccatcttccgggagaaagactttgacagtctggcccagcccagcttcttcgacagg
ttcatccgctggatctgttag
DBGET
integrated database retrieval system
