Peromyscus maniculatus bairdii (prairie deer mouse): 102907418
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Entry
102907418 CDS
T11302
Symbol
Wdr33
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33 isoform X1
KO
K15542
polyadenylation factor subunit 2
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102907418 (Wdr33)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102907418 (Wdr33)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102907418 (Wdr33)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
WD40_Gbeta
WDR55
EIF3I
Beta-prop_IFT140_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR36-Utp21_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_Vps41
Beta-prop_IFT122_1st
eIF2A
WD40_RFWD3
Beta-prop_SCAP
Collagen
WD40_MABP1-WDR62_1st
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_WDR11_2nd
Beta-prop_WDR41
Ge1_WD40
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
102907418
NCBI-ProteinID:
XP_006978008
Ensembl:
ENSPEMG00000013103
UniProt:
A0A6I9LF12
LinkDB
All DBs
Position
19:21706901..21821594
Genome browser
AA seq
1336 aa
AA seq
DB search
MATEIGSPPRFFHMPRFQHQAPRQLFYKRPDFAQQQAMQQLTFDGKRMRKAVNRKTIDYN
PSVIKYLENRIWQRDQRDMRAIQPDAGYYNDLVPPIGMLNNPMNAVTTKFVRTSTNKVKC
PVFVVRWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDSPVRAMTWSHNDMWMLTAD
HGGYVKYWQSNMNNVKMFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERIL
RGHGADVKCVDWHPTKGLVVSGSKDSQQPIKFWDPKTGQSLATLHAHKNTVMEVKLNLNG
NWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHEGLFASGGSDGSLLFWH
VGVEKEVGGMEMAHEGMIWSLAWHPLGHILCSGSNDHTSKFWTRNRPGDKMRDRYNLNLL
PGMSEDGVEYDDLEPNSLAVIPGMGIPEQLKLAMEQEQMGKDEANEIEMTIPGLDWGMEE
VMQKDQKKVPQKKVPYAKPIPAQFQQAWMQNKVPIPAPNEVLNDRKEDIKLEEKKKTQAE
IEQEMATLQYTNPQLLEQLKIERLAQKQADQIQPPPSSGTPLLGPQPFSGQGPISQIPQG
FQQPHPSQQMPLVAQMGPPGPQGQFRAPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGP
PQGLPRPQDMHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHIGPQG
PPAPQGHMGPQGPPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNP
RGMQGPPGPRENQGPAPQGIMIGHPPQEMRGPHPPSGLLGHGPQEMRGPQEMRGLQGPPP
QGSMLGPPQELRGPSGSQGQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIP
FQQQKTPLLGDGPRAPFNQEGQSAGPPPLIPGLGQQGAQGRIPPLNPGQGPGPNKGDSRG
PPNHHLGPMSERRHEQTGGPEHGPERGPFRGGQDCRGPPDRRGSHPDFPDDFSRPDDFHP
DKRFGHRLREFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGRR
PGDERFSRDPDDPRFRGRREESFRRGAPPRHEGRAPPRGRDNFPGPDDFGPEEGFDASDE
ASRGRDLRGRGRANPRGGSRKCLLPTPDEFPRFEGGRKPDSWDGNREPGPGHEHFRDAPR
PDHPPHDGHSPASRERSSSLQGMDMASLPPRKRPWHDGSGTSEHREMEAQGGPSEDRGSK
GRTGPGPSQRVPKSGRSSSLDGDHHDGYHRDEPFGGPPGSSSSSRGGRSGSNWGRGSNMN
SGPPRRGSSRGGGRGR
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atggctacagaaattggctctcctccacgatttttccatatgccgaggtttcaacaccag
gcaccccgacaactgttttataagcgccccgattttgcacagcagcaggcaatgcagcag
cttacctttgatggaaaacggatgaggaaagctgtaaaccggaaaaccatagactataat
ccttctgtaattaagtatttggagaataggatatggcaaagagatcagagagatatgcgg
gccattcagccggatgcaggttattataatgatctggtcccacctataggaatgttgaat
aatcctatgaatgcagttacaacaaaatttgttaggacatcaacaaacaaagtaaaatgc
ccagtatttgttgtgaggtggaccccagaaggaagacgcttggtcactggagcttctagt
ggagagttcaccttatggaatgggctgactttcaactttgaaaccatattgcaggctcat
gatagccccgtgagggccatgacttggtcacataatgacatgtggatgttgacagcagat
catggaggatatgtgaaatattggcaatccaacatgaacaacgtcaagatgttccaggca
cataaggaggcgattagagaggccagtttctcacccacggataataaatttgctacatgc
tctgatgacggcactgttagaatctgggattttcttcgttgccatgaggaaagaattctc
cgaggtcacggtgctgatgtgaagtgtgtagactggcatccaaccaaaggtttagtcgtt
tcaggaagtaaagatagccaacagccaatcaagttctgggatcccaagactgggcagagt
cttgcaacacttcacgcccataagaacacagtgatggaagtgaaattaaacctcaatggc
aactggctcctcacagcatcgcgtgaccatctctgtaagctttttgatatccgaaacctg
aaagaagagcttcaagtcttccgaggtcacaagaaggaagccacagctgtagcctggcat
cctgttcacgaaggactgtttgccagtggcgggtctgatggctctctgttattctggcat
gttggggtagagaaggaagtaggtgggatggagatggctcatgaagggatgatctggagt
ttggcttggcatcctcttggacatattctctgctcgggctcaaatgaccataccagcaaa
ttctggactcgaaaccggcctggtgataagatgcgagatcgctataatctgaacctttta
cctggcatgtcggaggatggagtagagtatgatgacctggaacctaatagcctggcagtc
atcccagggatgggaataccagaacaactgaaattagctatggagcaagaacagatgggg
aaagatgaagcaaatgaaatcgagatgacaattccaggcctagattggggaatggaggaa
gtgatgcaaaaggatcagaagaaggttccgcagaagaaggtcccttatgcaaagcccatt
cctgctcagttccagcaggcctggatgcaaaataaagttccaattcctgctccaaatgag
gtactgaatgataggaaagaggatatcaaattggaagagaagaaaaaaacacaagcagaa
attgaacaagaaatggccacattacagtataccaatccacagcttttagagcaacttaaa
attgaaaggcttgcacagaaacaggctgatcagatccagcctccaccctcgtctggtacc
cctctgctcggacctcagcccttttctggacaaggtccaatatctcagattcctcaaggt
tttcagcaacctcatccatctcagcagatgccattggtggctcagatgggtcctccaggt
ccccagggccagttcagagctcctggaccccagggacaaatgggaccacaaggccctcca
ttgcatcaaggaggtgggggaccacaaggattcatgggaccacaaggaccccagggccct
ccccagggactgcctcggcctcaagacatgcacggtccccaaggaatgcagaggcaccct
ggacctcatggccctttgggtccccaagggccacccggacctcaaggtagttctggtcct
caaggtcatatgggtccccagggtccacctggaccacagggtcacattggcccccaaggt
ccacctgctcctcagggccacatgggcccgcaggggcctcctggtactcaaggaatgcag
ggaccacctggtccccgaggaatgcaaggacctcctcatcctcatgggatacagggtgga
ccagggtctcaaggaatccaaggtccagtgtctcagggacctttgatgggactgaatcca
agaggaatgcaggggcctccaggacctcgggagaaccagggtcctgctcctcaagggatc
atgattggccacccacctcaagagatgagaggacctcatcctccaagtggattgctggga
catggccctcaggaaatgagaggtccgcaggagatgcggggcctgcaggggcctccacca
cagggatccatgttgggccctccacaggaacttcgagggccctcagggtcacaaggacag
caggggccgccccagggctctttgggacctccaccccagggtggcatgcaaggaccccct
ggacctcagggacaacagaacccggcaagagggccacatccatctcaagggccaatacca
ttccagcagcaaaaaacacctctgctaggtgatgggccccgggctcccttcaatcaggaa
ggacagagtgcgggtcccccacccttgataccaggcctagggcagcagggagcacaaggc
cgaatccctcctctgaaccctggacaaggacctggccctaacaaaggtgactctcgaggc
cctcccaaccatcacctgggccccatgtcagagaggcggcacgagcagacgggtggcccc
gagcatgggcctgagaggggccctttccggggtggccaggactgcaggggtcctcctgac
aggcgtggctctcaccctgatttccctgacgacttcagcagaccagacgacttccaccct
gacaagcgctttggccaccggttaagggaatttgaagggcgaggaggacccttaccacaa
gaagagaagtggaggcgagggggccctggacctccctttccacccgatcacagggaattc
agtgagggtgatggccggggtgcagcccgaggccctccaggggcatgggaaggccgcaga
cctggagatgaacggttctccagggatcctgacgacccacgttttcgaggacgcagagaa
gaaagctttagaagaggagcccccccaagacatgaaggccgggctccaccaagaggaagg
gacaactttcctggtcctgatgactttggtccagaagagggttttgatgcttctgatgaa
gcatcccgaggacgagatctcagaggacgaggccgtgccaacccacgagggggatccagg
aagtgcctactccccactcctgacgagttccctcgctttgaaggaggacggaagccagat
tcctgggatggaaaccgagagcccggaccaggtcatgaacatttccgtgatgctccccgc
cccgatcatccccctcatgatggccactcaccagctagcagagagcgctcctcttctctc
caaggcatggacatggcctccctaccaccccggaagcgtccctggcatgatgggtcgggc
acttctgaacacagagagatggaggcccagggaggcccctcggaggaccgaggaagcaaa
ggccgaacaggcccaggaccttcccagagagtgccaaagtccgggcgttccagctctttg
gatggagaccatcatgatgggtaccacagagatgaaccttttggtggccctccaggcagc
agctcatcttctcgagggggccggagtggcagtaactggggtagagggagtaacatgaac
tctggacctccacggagaggctcttcaaggggtggcgggaggggtcggtag
DBGET
integrated database retrieval system
