Peromyscus maniculatus bairdii (prairie deer mouse): 102907808
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Entry
102907808 CDS
T11302
Symbol
Col3a1
Name
(RefSeq) collagen alpha-1(III) chain
KO
K19720
collagen type III alpha
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04611
Platelet activation
pmav04820
Cytoskeleton in muscle cells
pmav04926
Relaxin signaling pathway
pmav04933
AGE-RAGE signaling pathway in diabetic complications
pmav04974
Protein digestion and absorption
pmav05146
Amoebiasis
pmav05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
102907808 (Col3a1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
102907808 (Col3a1)
09152 Endocrine system
04926 Relaxin signaling pathway
102907808 (Col3a1)
09154 Digestive system
04974 Protein digestion and absorption
102907808 (Col3a1)
09160 Human Diseases
09174 Infectious disease: parasitic
05146 Amoebiasis
102907808 (Col3a1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
102907808 (Col3a1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
102907808 (Col3a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
pmav00536
]
102907808 (Col3a1)
Glycosaminoglycan binding proteins [BR:
pmav00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
102907808 (Col3a1)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
102907808
NCBI-ProteinID:
XP_006974901
Ensembl:
ENSPEMG00000016978
UniProt:
A0A6I9L8N6
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Position
13:complement(66767981..66861412)
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AA seq
1465 aa
AA seq
DB search
MMSFVQSGTWLLLALFHPTFIWAQQTNVDELGCNHLGQSYESRDVWKPEPCQICVCDSGS
VLCDDIICDDDPPDCPNPEIPFGECCAICPQPSTSAPSLPDGHGPQGPKGDPGPPGIPGR
NGDPGLPGQPGLPGPPGSPGICESCPTGGQNYSPQYDSYDVKSGVGGGGIGGYPGPAGPP
GPPGPPGSSGHPGSPGSPGYQGPPGEPGQAGPAGPPGPPGAIGPSGPAGKDGESGRPGRP
GERGLPGPPGIKGPSGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGAPGPM
GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSP
GSNGSPGQRGEPGPQGHAGAQGPPGPPGNNGSPGGKGEMGPAGIPGAPGLMGARGPPGPA
GTNGIPGQRGPSGEPGKNGAKGEPGARGERGEAGSPGIPGPKGEDGKDGSPGEPGANGLP
GAAGERGAPGFRGPAGPNGIPGEKGPAGERGGPGPAGPRGTPGEPGRDGAPGGPGLRGVP
GSPGGPGNDGKPGPPGSQGEVGRSGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP
GGPGLPGPAGKNGETGPQGPPGPTGPSGDKGESGPPGPQGLQGIPGTSGPPGENGKPGEP
GPKGEAGAPGAPGGKGDSGAPGERGPPGNAGAPGLRGGAGPPGPEGGKGPAGPPGPPGTS
GSPGLQGMPGERGGPGSPGPKGEKGEPGGAGADGAPGKDGPRGPTGPIGPPGPAGQPGDK
GEGGAPGLPGIAGPRGGPGERGEHGPPGPAGFPGAPGQNGEPGAKGERGAPGEKGEGGAP
GPAGPAGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGGRGLPGPPGNNGNPGPPGPSGAP
GKDGPPGPAGNSGAPGNPGVAGPKGDAGQPGEKGPPGAQGPPGSPGPLGIAGLTGARGLA
GPPGMPGPRGSPGPQGIKGESGKPGTSGHNGERGPPGPQGLPGQPGTAGEPGRDGNPGSD
GQPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPSGKSGDRGETGPAGPSGAPGPA
GARGAPGPQGPRGDKGETGERGSNGIKGHRGFPGNPGPPGSPGAAGHQGAVGSPGPAGPR
GPVGPHGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGG
GAAALGGGGEKSGGFSPYYGDEPMDFKINTEEIMSSLKSVNGQIESLISPDGSRKNPARN
CRDLKFCHPELKSGEYWVDPNQGCKMDAIKVFCNMETGETCINASPMTVPRKNWWTDSAA
EKKHVWFGESMNGGFQFSYGNPDLPEDVLDVQLAYLRLLSSRASQNITYHCKNSIAYMDQ
ASGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCAKHTGEWSKTVFEYRTRKALRLPI
IDIAPYDIGGPDQEFGVDIGPVCFL
NT seq
4398 nt
NT seq
+upstream
nt +downstream
nt
atgatgagctttgtgcaaagtgggacctggcttcttctcgctctgtttcatcccactttt
atttgggcacagcagaccaatgtagatgaattgggatgcaaccaccttggtcagtcctat
gagtctagggatgtttggaagccagaaccatgccaaatatgtgtctgtgattccggatct
gtcctctgcgatgacataatatgtgacgatgatccacctgactgccccaacccagagatt
ccatttggagaatgttgtgcaatatgcccacagccttccacatccgctccttcccttcct
gatggtcatggacctcaaggccccaagggagatccgggtcctcctggcattcctgggaga
aatggtgaccctggccttccaggacaaccaggtctccctggacctcctggctctcctgga
atctgtgaatcatgtccaactggtggtcagaattattctccccagtatgactcatatgat
gtcaagtctggagtaggaggaggaggaattggtggctatcctgggccagctggtccccca
ggccctccaggtccccctggttcttctggacatcctggctcccctggttctccaggatac
caaggtccccccggtgaacctggtcaagctggtcctgctggccctccaggacctcctggt
gctattggtccttctggtcctgctggaaaggatggagagtcaggcagacctggacgacct
ggagaacgtggactgcctggacctccaggtatcaaaggcccaagtggcatgcctggattc
cctggtatgaaaggacacagaggctttgatggacggaacggagaaaagggtgaaacgggt
gcccctggattgaagggtgaaaatggtcttcctggagacaacggagctcctggccccatg
ggtcccagaggtgctcctggtgagcgaggacggccaggccttcctggagctgcaggtgct
cgaggcaatgatggtgctcggggcagtgatggccagccaggtccccctggtcctcccgga
actgcaggattccctggatcccctggtgctaagggtgaagttggacccgcagggtcccct
ggctcaaatggatctccaggacaaagaggggaacctggaccacaaggacatgctggtgct
caaggccctcctggccctcctggaaacaatggcagtcctggcggcaaaggtgaaatgggt
cctgctggcattcctggagctcctggactaatgggagctaggggtccccctggaccagct
gggactaatggtatacccggccagcgaggtccttcaggtgaacccggcaagaacggtgcc
aagggagagccgggagcccgtggtgaacggggagaagctggttccccaggaatcccagga
cctaagggtgaagacggcaaagatggatcccctggggaacctggtgcaaatggacttcca
ggagctgctggagaaaggggtgctcctggcttccgaggacctgcagggccaaatggcatc
ccaggagaaaagggtcctgctggggagcgtggtggcccaggtcctgcagggccccgagga
acgcctggagagcctggacgagatggagccccaggaggcccaggactgaggggtgtgccc
ggcagcccaggaggaccaggcaatgatgggaaaccaggacctcccggaagtcaaggagaa
gttggccgctctggtccgcctggcccatctggcccccggggtcagcctggtgttatgggt
ttccctggtcctaaaggaaatgatggtgctcctggcaagaatggagaacggggtggccct
ggaggacccggccttccaggtcctgctggaaagaatggtgaaactggacctcagggtccc
ccaggccctactggaccatctggtgacaagggagagtccggaccccctggtccacaagga
ttacaaggaatacctggtaccagtggtcctccaggagaaaatggaaagccaggtgaacca
ggtccaaagggtgaagctggtgcacctggagctcctggtggcaagggtgactccggtgcc
cctggagaacgtggaccccctggaaatgcaggggcccctggtcttagaggaggagctgga
ccccctggccccgagggaggaaagggccctgctggtccccctggtccccctggtacttct
ggttctcctggtctacaagggatgcctggagagagaggaggtcctgggagtcctggtcca
aagggtgaaaagggtgaaccagggggtgcaggagctgatggagctccaggaaaggatggg
ccaaggggtcctactggtcctattggcccccctggcccagctggtcagcctggagataag
ggtgaaggtggtgcccctggacttccgggtatagctggacctcgaggtggcccgggtgag
agaggtgaacatgggcctccaggacctgcgggcttccctggtgctcctggacagaatggc
gaaccgggtgctaaaggagaaagaggtgcccctggagagaagggtgaaggaggcgctcct
ggacctgcagggcccgctggaggttctggacccgctggtcctcctggtcctcagggtgtc
aagggtgaacgtggcagtcctggtggtcctggtgctgctggctttcctggtgggcgtggt
cttcctggtcctcctggtaacaatggtaacccgggccctccagggcctagcggtgctcct
ggcaaggacggtcctccaggtcctgctggtaacagtggtgctcctggcaaccctggagta
gctggaccaaaaggtgatgctggccaacctggagagaagggaccacctggtgctcaggga
cctcctggatccccaggcccacttggaattgcaggacttactggagctcgaggtcttgct
ggaccaccaggcatgccaggtcccaggggcagccctgggcctcaaggtatcaagggtgaa
agtggaaaaccgggaaccagtggccataatggggaacgaggtcctcctggaccccaaggt
cttcctggtcaacctggtacagctggtgaacctgggagggatggaaaccctggatcagac
ggtcagccaggaagagatggatctcccggtggcaagggtgatcggggtgaaaacggttct
cctggtgccccgggcgctcctggtcatccaggcccacctggtcccgtgggtccatctggg
aaaagcggagacagaggcgaaactgggcctgctggtccttctggtgctccaggacctgct
ggagctcggggtgctcctggtccccaaggtccacgaggtgacaagggtgaaaccggtgag
cgtggttccaatggcatcaaaggacaccgaggattccccggcaatccaggtcccccaggt
tctcctggtgctgccggtcaccagggtgcagttggtagtcctggacctgcaggtcccaga
ggaccagttggaccacatgggcctcctggaaaagatgggacgagtgggcatcctggtccc
attggaccgccaggacctcgaggcaacagaggtgaaagaggatctgagggctcgccaggc
caccctgggcagccaggcccccctggacctcctggtgcacctggtccttgctgtggtgga
ggcgctgctgcccttggaggtggaggtgaaaagtctggtggattttcaccatattatggt
gatgaaccaatggatttcaagatcaacaccgaggagattatgtcttcactcaaatctgta
aatggacaaatagagagtctcattagtcctgatggttctcgtaaaaaccctgctcggaat
tgcagagacctgaaattctgccacccagaactcaagagtggagaatattgggttgatcct
aaccaaggttgcaagatggatgctatcaaagtgttctgtaacatggaaactggggaaaca
tgtataaatgccagccctatgactgttccacggaagaactggtggacagactctgctgct
gaaaagaaacatgtttggtttggagaatctatgaatggtggatttcagttcagctatggc
aatcctgatcttcctgaagatgttcttgatgtacagctggcatacctcaggctcctctcc
agcagggcctcccagaacattacataccactgcaagaacagtattgcctacatggatcag
gccagtggcaatgtcaagaagtctctaaagctgatgggctccaacgaaggggaattcaag
gctgaaggaaacagcaaattcacttacacagttctggaggatggctgtgctaaacacacc
ggggaatggagcaaaacagtctttgaatatcgaacacgcaaggccctgagactacccatc
atagatatcgcaccctatgacatcggtggtcccgatcaagaatttggtgtggacattggc
cctgtttgctttttataa
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