Peromyscus maniculatus bairdii (prairie deer mouse): 102907912
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Entry
102907912 CDS
T11302
Symbol
Pcdh20
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
102907912 (Pcdh20)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pmav01009
]
102907912 (Pcdh20)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
pmav04515
]
102907912 (Pcdh20)
Protein phosphatases and associated proteins [BR:
pmav01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
102907912 (Pcdh20)
Cell adhesion molecules [BR:
pmav04515
]
Cadherins
Protocadherins
102907912 (Pcdh20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_2
Cadherin_CELSR2_9th
Ig_Cad99C_N
Motif
Other DBs
NCBI-GeneID:
102907912
NCBI-ProteinID:
XP_006975603
Ensembl:
ENSPEMG00000000491
UniProt:
A0A6I9LDQ3
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All DBs
Position
9:complement(85997820..86003972)
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AA seq
952 aa
AA seq
DB search
MRGQGNARSSLVQAVSLRPATWHPCLDMGHLHRPRSSTSHRNLTHVFLLFLFVGPFNCLA
SYSRATELLYSLNEGLPAGVLIGSLAEDLRLLPRASGRQSQQLLHPERTATEGNPPLSFS
LASGGLSGQYVTLDNRSGELHTSAQEIDREALCLDGGGGTAWGGSTSIASSPSSDSCLLL
LDVLVLPQEYFRFVKVKIAIRDINDNAPQFPISEISVWVPENSPVNTRLAIEHPAVDPDV
GINGVQTYRLLDYHGMFTLDVEENENGERTPYLIVMGALDRETQDQYVSIIIAEDGGSPP
LLGSATLTIGISDINDNCPLFIDSQINVTVYGNATVGTPIAAVQAVDRDLGTNAQITYSY
SQKVPQESKDLFHLDETTGVIKLFSTIGGSVLQTHKLTILANGPGCIPAVITALVSIIKV
IFRPPEIVPRYIANEMDGVVYLKELEPVNTPIAFFTIRDPEGKSKINCYLDGEGPFRLAP
YKPYNNEYLLETTKPMDYEQQQFYEIAVVAWNSEGFHVKRVVKVQLLDDNDNAPVFLQPL
IELTIEENNAPNAFLTKLYATDADSGERGQVSYFLGPDAPSYFSLDSVTGILTVSTQLDR
EEKEKYRYTVRAVDCGKPPRESVATVALTVLDKNDNSPRFINKDFSFFVPENFPGYGEIG
VISVTDADAGRNGWVALSVVNQSDIFVIDTGKGMLRAKVSLDREQQSSYTLWVEAVDGGE
PALSSTTKITILLLDINDNPPLVLFPQSNMSYLLVLPSTLPGSPVTEVYAVDKDTGMNAV
IAYSIIGRRGPRPESFRIDPKTGNITLEEALLQTDYGLHRLLVKVSDHGYPEPLHSTVMV
NLFVNDTVSNESYIESLLRKEPEINIEEKEPQISIEPTHRKAESVSCMPTLVALSVISLG
SITLVTGMGIYICLRKGKKHHREDENLEVQIPLKGKIDLCMRERKPMDISNI
NT seq
2859 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggccaagggaacgcgcgcagctcgctggtccaggcagtgagcttgcgcccggcg
acctggcacccgtgcctggatatggggcatctacatcgtcccaggagcagtaccagccac
aggaacctgacgcatgtttttctgcttttcctcttcgtgggacccttcaactgcctcgcg
agttacagccgtgccaccgagcttctgtacagcctaaacgagggactgcccgcgggggtg
ctcataggcagcctggccgaagacctaaggctgctgccccgggcctctgggaggcagagt
cagcaactgctgcatccagagcgcactgccactgaggggaacccccctctctctttcagc
ttggcctctggagggctgagtggccagtatgtgaccctagacaaccgctccggggagctg
cacacttctgcccaggagatcgacagagaagcgctgtgtctcgatgggggcggagggact
gcctggggcggcagcacctccattgcctcctctccttcctctgactcttgccttttgctt
ctggatgtgctggtcctgcctcaggaatattttaggtttgtaaaggtgaaaattgccatc
agggatatcaacgacaatgctccacagttcccaatttctgaaatctctgtttgggtcccg
gaaaattcacctgtaaacacccgattggcgatagagcacccagccgtggaccccgatgta
ggcatcaatggagtgcaaacctatcgcttactggactaccatggcatgtttaccctggat
gtggaggagaatgagaatggggaacgaaccccctacttgattgtcatgggtgctttggac
agagaaacccaggaccagtatgtaagcatcatcatagctgaggatggtggttccccacca
ctgctgggcagtgccaccctcaccattggcataagtgacattaatgacaattgtcctctc
tttatagactcgcaaattaatgtcaccgtctatggaaatgctacagtgggcacccccatt
gcagctgtccaggctgtcgatagagacttagggaccaacgcacagatcacttacagttac
agccagaaagttccacaggaatccaaggatttgttccacctggatgagacgactggagtc
attaaacttttcagtacgattggtgggagtgttctacagacacataagctcaccatcctt
gctaatggaccaggctgtatccctgcagtaatcactgctcttgtgtccatcatcaaagtc
attttcagacccccagaaatcgtcccacgttatattgcaaatgagatggatggggttgtg
tatctaaaagaactggagcctgttaacaccccaattgcgtttttcaccataagagatcca
gaaggtaaatccaagattaactgctacctcgatggtgaagggccatttaggctagcaccc
tacaagccgtacaacaatgaatatctgttggagaccacgaaacctatggactatgagcag
cagcaattctatgaaatagctgtagtggcctggaactcggaagggtttcatgtcaagaga
gtcgttaaagtacaacttttagatgacaatgacaatgctcctgttttccttcaacctttg
atagaactgaccattgaagaaaacaacgcgcccaatgcctttctaacgaagctctatgct
acggatgctgacagcggtgagagggggcaagtttcctatttcctggggccagacgcacca
tcatatttttccttagacagtgtcacagggattctgaccgtttctacccagctagacaga
gaagagaaagaaaagtataggtacactgtccgtgctgtggactgtgggaagccacccaga
gaatctgtggctacagtggctctcactgtgttggataaaaacgacaacagtcccaggttc
atcaacaaggacttcagcttttttgtgccagaaaactttccaggatatggtgaaattgga
gtcattagtgtaacagatgccgatgctgggaggaatggatgggtagccctttcagtggta
aaccagagtgacatttttgtcatagatacaggaaagggcatgctgagagctaaagtctct
ttagacagagagcagcaaagctcttacactctgtgggtggaagctgtcgatgggggtgag
cctgccctttcttccaccacaaaaatcacaattctccttctggacatcaatgataaccct
cctcttgtcttatttcctcagtctaatatgtcttatctgttggtcctaccttccactctc
cctggctcaccagttacagaggtctatgctgttgataaagatacaggcatgaatgctgtc
atagcttacagtatcatagggagaagaggtcccaggcctgagtccttcagaattgaccct
aaaactggcaacataactctggaagaagctttgctgcagacagattatggactgcatcgc
ttactggtgaaagtgagtgaccatggctaccccgagcctctgcattccactgtcatggtg
aacctatttgtcaatgacactgtcagtaacgaaagctatattgagagtcttttaagaaaa
gaaccagaaattaatatagaagagaaagaaccacaaatctcaatagaaccaactcatagg
aaggcagagtctgtgtcctgtatgcccacattagtagctctgtctgtcatcagcctgggt
tccatcacactagtaacagggatgggcatctatatctgcttacggaaaggtaaaaagcat
cacagggaagacgaaaatttggaagtacaaattcccctgaaaggaaaaattgacttgtgt
atgagagagaggaaaccaatggatatttctaatatttga
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