Peromyscus maniculatus bairdii (prairie deer mouse): 102909196
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Entry
102909196 CDS
T11302
Symbol
Pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03015
mRNA surveillance pathway
pmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102909196 (Pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
102909196 (Pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102909196 (Pabpc1)
03041 Spliceosome [BR:
pmav03041
]
102909196 (Pabpc1)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102909196 (Pabpc1)
mRNA cycle factors
Stress granule specific factors
102909196 (Pabpc1)
Spliceosome [BR:
pmav03041
]
Complex C
Other components
Complex C specific factors
102909196 (Pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RRM_5
RRM_10
RBD_RDR6
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
102909196
NCBI-ProteinID:
XP_076411998
Ensembl:
ENSPEMG00000014998
LinkDB
All DBs
Position
20:26097481..26110730
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AA seq
636 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQ
RVANTSTQTMGPRPAAAAAAAAPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQQPAVHVQ
GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctccctctacgtgggggacctgcacccc
gacgtgaccgaggcgatgctctacgagaagttcagcccggccgggcccatcctctccatc
cgggtctgcagggacatgatcacccgccgctccttgggctacgcgtacgtgaacttccag
cagccggcggacgcggagcgtgctttggacaccatgaattttgatgtgataaagggcaag
ccagtacgcatcatgtggtctcagcgtgatccatcacttcgcaaaagtggagtaggcaac
atattcattaaaaatttggacaaatccattgataataaagcactgtatgatacgttttct
gcatttggtaacatcctttcatgtaaggtggtttgtgatgaaaatggttccaaaggctat
ggatttgtacattttgaaacacaggaagcagctgaaagagctattgagaaaatgaatggg
atgcttctaaatgaccgtaaagtgtttgttggacgatttaagtctcggaaggaacgagaa
gcagaacttggagcaagggcaaaggaattcaccaacgtttacatcaagaactttggagaa
gacatggatgatgagcgccttaaggatctctttggcaagtttgggcctgccttaagtgtg
aaagtaatgactgatgaaagtggaaaatccaaaggatttggatttgtaagctttgaaagg
catgaagatgcacagaaagctgtggatgagatgaatggcaaggagctcaacggaaaacag
atttatgttggtcgagctcagaaaaaagtggaacggcagacggaacttaagcgcaaattt
gaacagatgaagcaagataggatcaccagataccagggggttaacctttatgtgaaaaat
cttgatgatggtattgatgatgaacgtctccggaaagaattttctccatttggtacaatc
actagtgcaaaggttatgatggagggtggtcgcagcaaaggatttgggtttgtgtgtttc
tcttcccctgaagaagccactaaagcagttacggagatgaatggcagaattgtggccacg
aagccactctatgtagctttagctcagcgcaaagaagagcgccaggctcacctcactaac
cagtatatgcagagaatggcaagtgtgcgggctgtgcccaacccggtgatcaacccctac
cagccagcaccgccttcagggtatttcatggcagctatcccccagactcagaaccgtgct
gcatactatcctcctagccaaattgctcaactaagaccaagtcctcgctggactgctcag
ggtgccagacctcatccattccagaacatgcccggtgctatccgcccagctgctcctaga
ccaccatttagtactatgagaccagcttcctcacaggttccacgagtcatgtcaacacag
cgtgttgctaacacttcaacacagaccatgggtccacgtcctgcggctgctgctgctgca
gctgctcctgctgtccgcaccgttccccagtacaagtacgctgcgggagtccgcaatccc
cagcaacatcttaatgcacagccacaagttaccatgcaacagcctgctgttcatgtgcaa
ggtcaagaacctttaactgcttccatgttggcatctgccccccctcaagagcaaaagcaa
atgttgggtgaacggctgtttcctcttattcaagccatgcaccctactcttgctggtaaa
atcacaggcatgctgttggagattgacaattcagagttacttcacatgcttgagtctcca
gagtctctccgctcaaaggttgatgaagctgtagctgtactacaagcccaccaagcaaaa
gaggctgcccagaaggcagtgaacagtgccactggtgttccgactgtttaa
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