KEGG   Peromyscus maniculatus bairdii (prairie deer mouse): 102909746
Entry
102909746         CDS       T11302                                 
Symbol
Col4a4
Name
(RefSeq) collagen alpha-4(IV) chain isoform X2
  KO
K06237  collagen type IV alpha
Organism
pmav  Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav04151  PI3K-Akt signaling pathway
pmav04382  Cornified envelope formation
pmav04510  Focal adhesion
pmav04512  ECM-receptor interaction
pmav04518  Integrin signaling
pmav04820  Cytoskeleton in muscle cells
pmav04926  Relaxin signaling pathway
pmav04933  AGE-RAGE signaling pathway in diabetic complications
pmav04974  Protein digestion and absorption
pmav05146  Amoebiasis
pmav05165  Human papillomavirus infection
pmav05200  Pathways in cancer
pmav05222  Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:pmav00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04151 PI3K-Akt signaling pathway
    102909746 (Col4a4)
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    102909746 (Col4a4)
   04518 Integrin signaling
    102909746 (Col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    102909746 (Col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    102909746 (Col4a4)
 09150 Organismal Systems
  09152 Endocrine system
   04926 Relaxin signaling pathway
    102909746 (Col4a4)
  09154 Digestive system
   04974 Protein digestion and absorption
    102909746 (Col4a4)
  09158 Development and regeneration
   04382 Cornified envelope formation
    102909746 (Col4a4)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    102909746 (Col4a4)
  09162 Cancer: specific types
   05222 Small cell lung cancer
    102909746 (Col4a4)
  09172 Infectious disease: viral
   05165 Human papillomavirus infection
    102909746 (Col4a4)
  09174 Infectious disease: parasitic
   05146 Amoebiasis
    102909746 (Col4a4)
  09167 Endocrine and metabolic disease
   04933 AGE-RAGE signaling pathway in diabetic complications
    102909746 (Col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pmav04147]
    102909746 (Col4a4)
   00536 Glycosaminoglycan binding proteins [BR:pmav00536]
    102909746 (Col4a4)
Exosome [BR:pmav04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   102909746 (Col4a4)
Glycosaminoglycan binding proteins [BR:pmav00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   102909746 (Col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 102909746
NCBI-ProteinID: XP_006990425
Ensembl: ENSPEMG00000023902
LinkDB
Position
13:32478915..32595216
AA seq 1683 aa
MKFSFRWTRSSVTGPWLLVFILFTIRYEYGSGKKYGGPCGGRNCSVCQCFPEKGSRGQPG
PLGPQGPIGPLGPPGPIGIPGEKGLRGDSGLPGAAGEKGDKGPTGVPGFPGLDGVPGHPG
PPGPRGKPGVDGFSGSRGDPGLPGERGAPGPRGPSGHPGENGEKGRSVFISGGVKGIQGD
RGEPGLPGLPGSRGAQGSTGPMGYAGAPGPAGPIGHPGSPGLKGNPAVGIKGQRGEPGEV
GRHGPPGPTLFIQPPDLSLYKGEKGIKGIPGMIGPPGPPGRKGEPGIGTKGEKGIPGFPG
PRGEPGSHGSPGFPGFKGEQGAAGDPGMFGFLGPKGDPGDRGYPGPPGVLLTPSPPLKGP
PGDPGPPGRYGEIGDVGLPGPPGPPGRPGETCPGMMGPPGPPGIPGPPGFPGEPGIPRRL
DCAPGKPGKPGPPGLPGAPGPQGPPGSDVIYCSPGCPGPMGEKGKMGPPGRRGAKGEKGN
EGLCSCPPGPMGPAGPPGLPGRQGSKGDLGLPGWHGEKGDPGQPGAEGPPGPPGKPGALG
PPGHKGAKGDMVTSRVKGQKGERGHDGPPGFPGPRGQDGQDGRAGERGDPGPPGGHQDAT
PGERGPPGLPGPPGNAGPVGPPGLGFPGPPGDRGRPGEPGRPGMRGFDGMKGQRGDTISC
NVTYPGNPGPPGFDGPPGPKGFPGPPGAPGMRCPDGQKGRQGKPGMPGIPGPPGFRGDMG
DPGIGGEKGTSPIGPPGPPGSPGIDGQKGIAGDPAFGDPGPPGDRGLPGVPGMKGHKGYP
GCPGAEGPPGIPGSPGLKGPKGREGSPGFPGIPGPPGHSCERGAPGIPGQPGLPGAPGSP
GAPGWKGQPGDMGPSGPAGMKGLPGLPGLPGADGLRGPPGIPGPTGESGLPGLLGPKGHP
GLPGYPGFPGERGRSGPDGQPGRKGEIGEKGWPGLQGDLGERGAKGARGPPGDAGEAAII
SPKGDPGDTGPPGDDGFPGQRGDKGSPGMQGGRGDPGRDGPPGLYRGPPGTNGFPGPPGP
PGPPGPPGLKGVIGFPGFPGDQGDPGPPGPPGLPGDDGARGPKGNKGDPASQCGPPGPKG
EPGSPGYQGHPGAPGDQGFPGAEGHRGPPGRPGQPGSSGPPGCPGDPGMPGQKGHPGEMG
DPGPRGFPGDLGRPGPPGVIGPPGSPGLNGLHGLKGEKGAKGTSGLHEMGPPGPMGMPGL
KGERGDPGSPGISPPGLSGEKGLPGPPGRPGPPGPTGAPGRAAKGDIPDPGPPGDWGPPG
PDGPRGAPGPPGAPGNVDLLKGDPGDSGLPGPPGSRGPPGPPGCQGAPGCDGKDGQKGPM
GFPGPPGPPGLPGAPGEKGLPGPPGRKGPVGPPGCRGEPGPPVDVDSCPRIPGLPGVPGP
RGPEGAVGHPGQRGPPGPGCKGEAGLDGRRGQDGIPGPPGPPGRKGDTGEAGCPGAPGPP
GPPGDPGPKGFGPGYLSGFLLVLHSQTDQEPICPVGMPRLWTGYSLLYMEGQEKAHNQDL
GLAGSCLPVFSTLPFAYCNIHQVCHYAQRNDRSYWLSSAAPLPMMPLSEEEIRPYISRCA
VCEAPAQAVAVHSQDQSIPPCPRAWRSLWIGYSFLMHTGAGDQGGGQALMSPGSCLEDFR
AAPFLECQGRQGTCHFFANEYSFWLTTVSPDLQFSSGPSPDTLKDVRAQRQKTSRCQVCM
KYS
NT seq 5052 nt   +upstreamnt  +downstreamnt
atgaagttctctttcagatggaccaggtcctcagtcacaggcccctggttactagtattt
attctctttaccatacgatatgaatatgggagtggcaagaaatacggcggcccttgtgga
ggaagaaactgctctgtctgccagtgttttcctgagaagggatcgcggggtcaaccagga
ccactgggaccacagggaccaatagggcccttgggacccccgggacccattgggattcca
ggagagaagggtctgagaggtgacagtggcctgcctggagcagcaggagagaaaggagac
aagggtccaactggtgtccctggatttccaggtttggatggtgtacctggtcacccgggg
cctcccggacccagaggcaaacctggtgtggatggcttcagcggctcaagaggtgatcca
gggcttccaggagaaagaggagctcctggcccaagaggcccctctggtcaccctggggaa
aatggagaaaaaggaaggtcggtgttcatttcagggggcgttaaaggtattcagggagac
cgcggggaaccaggactgcccggcttaccaggatctaggggtgcacaaggatcaacaggg
cccatggggtatgctggtgcaccagggccagcaggacctataggtcatcccgggagccct
gggttgaaggggaatcctgctgtgggaataaaaggacaaaggggagagccgggtgaagtt
ggccggcatggtcctcctgggcccaccctgtttatacaaccacctgatttgagtctctat
aaaggagaaaagggtataaaaggaattcctggaatgattggacctccaggacctccagga
cgcaaaggagagcctggtatcggaacaaaaggagagaaaggtattcctgggtttccagga
cctcggggtgagcctggttcccatggatctccaggttttccaggattcaagggggaacaa
ggggcagctggagatcctgggatgttcggatttcttggtccaaagggggatcctggagat
cgcggatacccaggaccaccaggcgtcttgctaactccctctcctccactcaaaggtcct
ccaggggacccaggcccccctggccgctatggagaaattggagacgttgggctaccaggt
cctcccgggcccccaggcagaccaggggaaacttgtccaggcatgatgggacctcctgga
ccaccagggattcctggtcctccaggatttccaggggaacctggtattcctagaagactc
gactgtgccccaggaaaaccagggaagccaggaccacctggcctgcctggagcaccagga
ccacagggcccccctggatcagatgttatatattgtagccctgggtgccctggaccaatg
ggagaaaaaggaaagatgggtccaccaggaagaagaggagccaaaggagaaaaaggaaat
gagggactctgtagctgtccacctggtcccatgggacccgctggccctccaggacttcct
ggaagacaaggaagtaaaggagacttagggcttcctggctggcatggagaaaagggtgat
ccaggccagcctggtgctgaaggacctccagggccaccaggaaaacctggtgccttgggg
ccccctggccacaaaggggccaagggtgacatggtcacatcaagagtgaaagggcaaaag
ggagaaagaggacacgatgggccaccaggatttccagggccacgtggacaagatggtcag
gatggacgtgctggagaaagaggggatcccggccccccaggcggccatcaggatgcaacc
ccgggtgagagagggcctcccggactgccaggtcctccagggaacgcaggacctgtgggt
cctccaggcctgggatttccaggcccaccaggagacagaggccgaccaggagagccgggg
cgtccaggcatgaggggctttgatggcatgaaggggcagagaggtgacaccatttcttgt
aacgtaacctaccctgggaatccaggccctccaggttttgatggacctccaggtccgaag
gggtttccaggtcccccaggtgctcctggtatgagatgtccagatgggcagaaaggtcgg
cagggcaaaccaggaatgcctggaattccaggtccaccaggttttcgtggtgacatggga
gatccaggaatcggaggtgaaaaggggacctcccctattgggcccccaggtccacctggg
tctcctggaatagatggccagaaaggaatcgcaggagaccctgcatttggtgacccagga
ccccctggagataggggtcttccaggagtgccaggcatgaaagggcacaaaggttaccca
ggatgcccaggggctgaagggccacctggcatccctggatctccaggtctcaaaggtccc
aaaggcagagaaggaagtcctgggtttccagggatcccaggaccccctggccattcctgt
gaaagaggtgctccagggatcccaggccaaccaggacttcctggagctcccggcagtcca
ggggccccaggttggaaaggccagccaggagacatggggccttctggaccagctgggatg
aagggcctccctggcctcccaggcctcccaggagcagatggtctccgagggcctcctggg
atcccaggccccactggggaaagtggccttcctggccttctaggtccaaagggacaccca
gggctgcctggctaccctggttttcctggagaaagaggaaggtcaggccctgatggacaa
cctggaagaaagggagaaatcggagagaagggatggcctggcttgcagggagacctggga
gagagaggtgccaaaggagccagaggacctcccggtgatgcaggagaagcagccatcatt
tccccaaagggggatcccggggacactggtcctccaggagatgatgggttcccaggacag
agaggtgataaaggaagcccagggatgcaagggggaagaggagatcctggaagagatgga
ccacctgggctgtacaggggaccgcctgggacaaatgggttccctgggcctccaggtccc
cctggccctccaggcccacctggactaaaaggagtcattggttttccaggatttccaggt
gaccagggtgatccaggtcctccaggcccccctggactcccaggagatgacggagcaaga
ggacctaaaggaaacaaaggtgaccctgccagtcagtgtggtccacctggtccgaagggt
gagccaggtagccctggataccaaggacatccaggagcccctggagaccaaggctttcct
ggagctgaaggacatagaggaccaccaggcagacctggacagccaggctcttctggacca
ccagggtgtccaggtgacccagggatgcctgggcagaagggccatccaggagaaatggga
gaccctgggccaagaggtttcccaggagatttagggaggccaggtcctcctggagtaata
gggccccctgggtctcctggtctgaatggcttacacggtctcaagggtgagaaaggagcc
aaaggtacctcaggtttgcacgaaatgggtccacctgggccaatgggaatgcctgggcta
aagggagagagaggagaccctgggagtccaggaatttctcccccaggcctttctggagaa
aaagggctcccaggacccccagggagaccaggaccacctggtcccactggtgccccagga
agagctgctaaaggtgacattcctgatccaggtcctcctggagactggggacctcccggc
cctgatggcccaagaggagcacctgggcctccgggcgcccctgggaatgtcgaccttctg
aaaggggatccaggggactctggtttgcctggaccaccgggctcccgaggcccgccaggc
cctccagggtgtcagggtgccccaggatgtgatggcaaagatggccagaaaggacccatg
ggattcccagggcctccagggccacctggtcttcctggagcacctggagagaagggatta
cctggtcctccaggcagaaaagggcccgtaggccctcccggctgcagaggtgaacccggg
cctcctgtcgatgtggactcctgtcctcgaatcccaggacttcctggagtgccaggtccc
agaggaccagaaggagctgtggggcaccctggacagagaggacctcctggaccagggtgc
aaaggagaggctgggctggacggcaggaggggccaggatggcatccctggacctcccggg
cctccgggacgcaaaggtgacactggagaggctggctgccctggagcaccaggccctcct
ggtccacctggtgatcctgggcccaagggttttggccctggatacctcagtggcttcctc
cttgttctccacagtcagacagatcaagaacctatctgccctgtgggtatgccgcggctt
tggactgggtacagtctgttgtacatggaaggacaggagaaggcacacaatcaagatctt
ggtttggcagggtcttgtctccctgtgtttagcacactgccctttgcctactgtaacatc
caccaagtgtgccactatgcccagagaaatgacaggtcctactggctgtccagcgccgct
cctcttcctatgatgccgctctcagaggaagagatccgcccttacatcagccgttgcgct
gtgtgtgaggccccagcacaggcagtggctgtccatagtcaggaccaatccatcccaccg
tgtccacgggcgtggaggagcctctggatcgggtactcgtttctgatgcacaccggagct
ggggaccaaggaggaggacaggcactcatgtcacccggcagctgcctggaggacttcaga
gctgcaccattccttgaatgccagggccgacagggaacctgccacttctttgcaaatgaa
tacagcttctggctgaccactgtgagcccagacctgcagttttccagtggcccatcaccg
gacaccttgaaagatgtgcgggcccagcgccagaaaaccagcaggtgccaggtctgcatg
aagtacagctag

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