Peromyscus maniculatus bairdii (prairie deer mouse): 102910013
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Entry
102910013 CDS
T11302
Symbol
Pnldc1
Name
(RefSeq) poly(A)-specific ribonuclease PNLDC1 isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102910013 (Pnldc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102910013 (Pnldc1)
Enzymes [BR:
pmav01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102910013 (Pnldc1)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102910013 (Pnldc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
BT_MCC_alpha
Motif
Other DBs
NCBI-GeneID:
102910013
NCBI-ProteinID:
XP_006978092
Ensembl:
ENSPEMG00000016301
LinkDB
All DBs
Position
16:59451550..59474196
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AA seq
534 aa
AA seq
DB search
MDVGADEFEQSLPLLQELVAGADFVGLDIEFTGLRSNLSRPQQISLFDLPSEWYVKTRQS
VQQFTICQIGLSVFSSIEGESNKYVAHSCNFFLFPTTFGILDSEFSFQASSVQFLNQYGF
DYNKFLKNGIPYMNEEQEKKIKHSILRGNWRVRSSLDKDQIKVVIDKVTRWLDLAEEGDQ
MTLSGISGFQAFEVQLVLRQALPNIWTVLKDEGVVVKKVNQPHRWYLEHASCDQVSCWKE
QILLSARGFSVFFQMLVKAQKPLVGHNMMMDLLHLHEKFFRPLPESYDQFKQNIHSLFPV
LIDTKNVTKDIWKELRFPRVSNLSEVYDVLSSNLNPTQNSGPVIIHARQCKKYAETKCPH
EAAYDAFLCGSVLLKVAHLLLQRVHGGGPAQEPTFPQYLDVLAPYVNQVNLIRAGVPKIN
FSGPDYPSIRPPVLILTVRRWPGVSEQQVYREFQNLCKFDVRRFTRSQFLLLTNKFKDAR
SVLKEYRSHPTLQVSLYRYWRHSPNITCLLQVCSIVTTWAMVAFVLGRWSPRVQ
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggacgtgggcgccgatgaatttgaacagagcctcccactcctgcaggagcttgtcgcg
ggtgcggacttcgtgggtctcgacatagagttcacaggtctgcgttcaaacttgtcccgg
ccccagcagatcagtctttttgatttgccgtctgagtggtatgtgaagacccgtcagagt
gttcagcaatttacaatctgtcagattgggctctctgtgttctccagcattgaaggagag
tcaaacaagtatgtagcccactcctgtaacttcttcctctttcctacaacgtttgggatc
ttggactcagagttctctttccaggcgtctagcgttcagtttttgaatcagtatggcttc
gactataacaagttcctcaaaaatggaatcccatatatgaatgaagaacaggagaagaaa
attaagcacagtatcctgagagggaactggagagtccgaagctctctggataaagaccaa
attaaggtggtgattgacaaggtgactcggtggctggacctggctgaggaaggtgaccag
atgactctgtctggcatttctgggttccaagcctttgaggtccagctggtgctgaggcag
gccctccccaacatctggacagtgctgaaagacgagggggtggttgtgaagaaggtcaac
caacctcatcgctggtaccttgagcatgcctcttgcgaccaagtcagctgctggaaggag
cagatccttctctctgcaaggggcttctctgtgtttttccagatgttggtgaaggcccag
aagcccttggtcggacataacatgatgatggacctactgcatctccatgagaagttcttc
cgacctcttccagaaagctacgatcagtttaagcagaacatccacagcctgtttcctgtc
ctcattgacaccaagaatgtgacaaaggacatctggaaggaactgcgtttcccacgagtc
tccaacctctcagaagtgtatgacgtgctgagcagtaacttgaatcccactcagaattct
ggaccagtgattattcatgcgagacagtgtaaaaaatacgccgagactaagtgcccccac
gaagcagcgtatgacgccttcctctgcgggtcagttcttttgaaggtggcgcacttgctc
ctgcagagggtgcatggcggtggccctgcccaggagcccaccttccctcagtaccttgat
gtgctggcgccttacgtgaaccaagtgaatcttatccgagccggggttcctaaaattaat
ttttctggccccgattaccccagtatccgccctcctgtgctgatcctcaccgtcaggagg
tggcctggggtcagcgagcagcaggtctaccgtgaattccagaacctctgcaagttcgat
gtcaggcgcttcacccgaagccagttcctgctcctgaccaataagtttaaggatgcccgg
agtgtcttgaaggagtacaggagccatccaaccctgcaggtctccctgtaccgctactgg
agacattcccccaacatcacctgcctcttacaagtctgcagcatcgtcaccacctgggcc
atggttgccttcgtcctgggaagatggagccccagagtgcagtga
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