Peromyscus maniculatus bairdii (prairie deer mouse): 102910215
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Entry
102910215 CDS
T11302
Symbol
Skic2
Name
(RefSeq) superkiller complex protein 2
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102910215 (Skic2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102910215 (Skic2)
Enzymes [BR:
pmav01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102910215 (Skic2)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102910215 (Skic2)
mRNA degradation factors
3'-5' decay
Ski complex
102910215 (Skic2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
DUF3516
Motif
Other DBs
NCBI-GeneID:
102910215
NCBI-ProteinID:
XP_076414363
Ensembl:
ENSPEMG00000019001
LinkDB
All DBs
Position
21:2944222..2955431
Genome browser
AA seq
1244 aa
AA seq
DB search
MMETERLVLPPPDPLNLPLRALEVGCTGRWELLNEPGAPETTLPHGLPPCAPDLQQEAEQ
LFLSSPAWLPLHGVEYSARKWQRKRDPWSLLAALGAPVPSDLQAQRHPTTGQILGYKEVL
LENTNLSATTSLSLRRPPGPASQSLWGNPTQYPFWPGGMDEPTITDLSTREEAEEEIDFE
KDLLTVPPGFKKGVDFGPKDHQAPGPGLLSLSCLLEPLDLSGGDEDESEAAGGPGADPAS
ASPRSTPLVRASSLEDLVLKEASTIASPLEPPKPPPQEQWAVPVDVTSPVGDFYRLIPQP
AFQWAFEPDVFQKQAILHLEQHDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIK
ALSNQKFRDFRNTFGDVGLLTGDVQLHPEASCLIMTTEILRSMLYSGSDVIRDLEWVIFD
EVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNALEFADWIGRLKRRQIYVISTVAR
PVPLEHYLFTGNSPKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTH
QGGPAQDRGVYLSLLASLRARAQLPVVVFTFSRGRCDEQASGLTSLDLTTSSEKSEIHLF
LQRCLARLRGSDRQLPQVQHMSELLRRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATE
TFAMGVNMPARTVVFDSMRKHDGSAFRDLLPGEYVQMAGRAGRRGLDPTGTVILLCKGRV
PEMADLHRMMMGKPSQLQSQFRLTYTMILNLLRVDALRVEDMMKRSFSEFPSRKDSKAHE
QALAELTKRLGALEEPDVTGQLADLPEYYSWGEELTETRNMIQRRIMESVNGLKSLSTGR
VVVVKNEEHHNALGVILQVSANSASRVFTTLVLCDKPVVSESPRDKGPATPDVPYPDDLV
GFKLFLPEGPCEHTVVKLQPGDVAAISTRVLRVSGEKISEDFSRRQQPKFRKDPPIAAVT
TAVQELLRLAQAHPSGPPTLDPVNDLQLKDVSVVEGGLRARRLEELIRGAQCVHSPRFPA
QYLKLRERMRIQKEMERLRFLLSDQSLLLLPEYHQRVEVLRTLGYVDEAGTVKLAGRVAC
AMSSHELLLTELMFDNALSTLRPEEIAALLSGLVCQSPGDPGDQLPSTLKQGVERVRAVA
KRIGEVQVACGLNQTVEEFVGELNFGLVEVVYEWARGMPFSELAGLSGTPEGLVVRCIQR
LAEMCRSLRGAARLVGEPVLGAKMETAATLLRRDIVFAASLYTQ
NT seq
3735 nt
NT seq
+upstream
nt +downstream
nt
atgatggagaccgagagactcgtgctgcctccccctgaccccctgaacctgccccttcga
gcgctggaagtggggtgcactgggcgctgggagctgctgaacgagcctggggctccggag
accacccttccccacggcctccccccctgtgccccggatctacagcaagaagcagaacag
ctgttcctctcctctcccgcctggctgcctctgcatggtgtggagtactcagctcgaaaa
tggcagaggaagagggatccctggtctctcctggctgctttgggggctcctgtcccgtcc
gaccttcaggcccagagacacccaaccacaggccagatcctgggctacaaggaggtcttg
ctagagaacacaaacctgtcagccacgacctccttgtccctgcgccggcctccagggccg
gcctcccagtcactgtggggcaacccgacacagtatcctttctggccaggtgggatggac
gagcccaccataacagatctgagcactcgggaggaagctgaggaggagatagactttgag
aaagatcttctcactgtcccacctggcttcaagaaaggggtggattttggccccaaggat
caccaggctcctgggccaggtttgctcagcctcagctgtctgctggagcctctggatctg
agtggaggtgacgaggacgagagtgaggccgcaggaggccctggggcggaccctgcttcc
gcctctccccgcagcacccccctggtccgagcaagcagtttggaggatctagtgttgaag
gaagcatccacgatcgcatcccccctggagcctcccaagcctccccctcaggaacagtgg
gctgtacctgtggatgtcacgtcccctgtgggcgatttttaccgtctcattcctcagcct
gccttccagtgggcgtttgagccggatgtgttccagaagcaggccatcctgcatctggag
cagcatgactctgtcttcgtggcggctcacacatctgccgggaagacagtggtggctgag
tacgccattgccctggcccagaaacacatgacgcgtaccatttacacgtcccctatcaaa
gccctgagcaaccagaagtttcgggacttccggaacacgttcggggacgtgggactgctc
acaggagacgtccagctgcacccagaggcctcctgcctcatcatgaccacggagatcctc
cgctccatgctgtacagtggctcagacgtcatccgggacctggagtgggtcatctttgat
gaagtccactatatcaatgatgctgagcgtggggtcgtgtgggaggaggtactcatcatg
ctgcctgaccacgtctccatcatccttctgagtgccaccgtccccaatgccctggagttt
gctgactggattgggcggctgaagcggcggcagatctacgtgatcagcacggttgcccgt
cctgtccccctggaacactatctcttcacaggaaacagccccaagacgcagggggagctc
ttcctgctgctggactcccgaggggccttccacaccaaggggtactacgctgcagtggag
gccaagaaggagagaatgagcaagcatgcccagacctttggggccaagcagcccacgcac
caggggggccctgcacaggaccgtggggtgtacctgtccttgctggcttccctccgggcc
cgggctcagctgcctgtggtggtgttcaccttttcccgaggccgctgtgatgagcaggcg
tcgggcctcacctctcttgacctcacaacaagctcggagaagagcgagatccacctcttc
ctgcagcgatgccttgctcggctccgaggctccgaccgacagctgccccaggtccagcac
atgtcagagctccttcgccggggcctgggcgtgcaccacagcggcatcctgcccatcctt
aaggagatcgtggagatgctgttcagccgagggctggtcaaggtcttgtttgccactgag
acctttgccatgggggtgaacatgccggcgaggacggtggtgttcgactccatgcgcaaa
catgacggctccgccttccgggacctgctgcccggggagtacgtgcagatggcgggccgg
gcgggccggaggggcctggaccccacaggcaccgtcatcctgctctgtaagggccgagtg
cccgagatggcagatctgcaccgcatgatgatggggaagccatcccagcttcagtcccag
ttccgccttacatataccatgatcctcaacctgctgcgggtggatgccctcagggtggag
gacatgatgaagaggagcttctcagagttcccgtcccgcaaggacagcaaggcccatgag
caggctctggctgaactcaccaagaggctgggggccttggaggagcctgacgtgactggc
caactggccgacctgcctgaatattacagctggggggaggagctgacagagacccggaac
atgatccagagacgcatcatggagtctgtgaacgggctgaagtctctctcgacgggaagg
gtggtagttgtgaagaatgaggagcatcacaatgcgttaggtgtgatcctgcaggtctcc
gcaaactccgccagcagagtatttacaacactggtcttgtgtgataagcctgttgtgtcc
gagagcccacgggacaaggggccagccactccagatgtgccctacccggatgacctcgtg
ggcttcaagctgttcctgcctgaagggccctgtgagcacactgtggtgaagctccagcca
ggggatgtggctgccatctccacccgagtgctgcgggtgagtggggagaagatctctgag
gacttcagcaggaggcagcaaccgaagttcaggaaggaccctcccattgccgctgtgacc
actgcagtccaggagctgctgcgtctggctcaggcccatccttcaggacccccaaccctc
gaccccgtcaacgacctgcagctcaaggatgtgtcagtggtggaaggtgggctccgggcc
cggaggctggaggagctgatccggggggcccagtgtgtgcacagcccccggttccccgcc
cagtacctgaagctgcgggagcgaatgcggatccagaaggaaatggagaggctgcgcttc
ctgctgtccgaccagtccctgttgctgctccccgagtaccaccagcgtgtagaggtgctc
cggaccctgggctacgtggacgaggcaggcacagtgaagctggccggacgggtggcctgc
gccatgagcagccatgagctgctcctcacggagctcatgtttgataacgcactgagcacc
ctgcgacccgaggagattgcagctctgctctctggcctggtctgccagagccctggcgac
cctggggatcagctcccaagcaccctcaaacagggggtagagcgtgtcagagctgtggct
aagcggattggtgaggttcaggtggcctgtggcctgaaccagacagtggaggagtttgtg
ggagagctgaactttgggctggtcgaggttgtgtacgagtgggctcggggcatgcccttc
tccgagctggcagggctctcagggactcccgaaggcctggtggtccgttgcatccagcgc
ctggccgagatgtgtcgctcgcttcgaggagcggcccgtttggtaggagagcctgtgctc
ggtgccaagatggaaacggcagccaccttgctgcggcgggacattgtcttcgcagccagt
ctctacacccagtga
DBGET
integrated database retrieval system
