Peromyscus maniculatus bairdii (prairie deer mouse): 102910914
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Entry
102910914 CDS
T11302
Symbol
Xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1 isoform X1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pmav Peromyscus maniculatus bairdii (prairie deer mouse)
Pathway
pmav03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pmav00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102910914 (Xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pmav03019
]
102910914 (Xab2)
03041 Spliceosome [BR:
pmav03041
]
102910914 (Xab2)
Messenger RNA biogenesis [BR:
pmav03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
102910914 (Xab2)
Spliceosome [BR:
pmav03041
]
Complex B
Other components
Prp19-related factors
102910914 (Xab2)
Complex C
102910914 (Xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_14
HAT_PRP39_N
TPR_12
TPR_2
TPR_8
Suf
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_1
TPR_21
TPR_16
TPR_NPHP3
Motif
Other DBs
NCBI-GeneID:
102910914
NCBI-ProteinID:
XP_076416844
Ensembl:
ENSPEMG00000015526
LinkDB
All DBs
Position
23:50351258..50362539
Genome browser
AA seq
855 aa
AA seq
DB search
MVVMARVPRPERPDLVFEEEDLPYEEEIMRNQFSVKCWLRYIEFKQGAPKPRLNQLYERA
LKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVNNCHERAFVFMHKMPRLWLDYCQFL
MDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFLKLSPESA
EEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPDKVQSLNV
DAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAVRTVMTVRDFTQVFDSYA
QFEESMIAAKMETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEW
HKRVALHQGRPREIINTYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEK
ATKVNFKQVDDLASVWCQCGELELRHENYDEALKLLRKATALPARRAEYFDGSEPVQNRV
YKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKA
YERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLLYA
QLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQKAIEVLS
DEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTI
REMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDDMKLLEQRAEQLA
AEAERDQPPRAQSKIFFVRSDASREELAELAQQANPEEIQLGEDEDEDEMDLEPNEVRLE
QQSVPAAVFGSLKED
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggtggtgatggcgcgcgttccgcgtcccgagcggccggatcttgtttttgaggaagag
gaccttccctatgaggaagaaatcatgcggaaccagttctccgtcaaatgctggctccgc
tacatcgagttcaaacagggggccccgaaaccccggctcaatcagttgtacgagcgggcg
ctcaagctgcttccctgcagctacaaactctggtaccgctatctgaaggcacgccgggca
caggtgaagcatcgctgtgtgactgatcctgcctatgaagacgtcaataactgccatgag
agggccttcgtgttcatgcacaagatgccacgtctgtggctagactactgccagttcctc
atggaccagggacgcgtcacacacacccgccgcacctttgaccgtgctctccgggcacta
cccatcacgcagcactctcgcatctggcccctgtatcttcgcttcctgcgctcccaccca
ctgcctgagactgctgtgagaggctaccgtcgcttcctcaagctcagtcctgagagtgcc
gaggagtacatcgagtacctcaaatccagtgaccggctggacgaggctgcacagcgcctg
gccaccgtggtcaatgatgagcgctttgtgtccaaggcaggcaagtccaactaccagctg
tggcacgagctgtgcgaccttatctcccagaacccggacaaggtacagtccctcaacgta
gacgccataatccgtggtgggctcacccgcttcaccgaccagctgggcaagctgtggtgc
tccctggctgactactacatccgcagtggccacttcgagaaggctcgggacgtgtatgag
gaggctgtccgcaccgtgatgactgtgcgagacttcacccaggtgttcgacagctatgcc
cagtttgaggagagcatgatcgcggcaaagatggagactgcctctgaactggggcgcgag
gaggaggatgacgtggacctggagttgcgcctggcccgcttcgagcagctcattagccgg
cggcccctactcctgaacagcgtcctgctgcgccagaacccgcaccacgtccacgagtgg
cacaagcgtgtggccctgcatcagggccgcccccgggagattatcaacacgtacacagag
gctgtgcagacagtggaccccttcaaggccacaggcaagccccacacactgtgggttgca
tttgccaagttttatgaagataatggacagctggatgatgcccgtgtcatcctagagaag
gccaccaaggtgaactttaagcaagtggatgacctggcaagcgtgtggtgccagtgtggg
gagttggagctccggcatgagaattatgatgaggccttgaagctgctgcggaaagccacg
gcgctgcctgcccgtcgggctgagtactttgatggttcggagcccgtgcagaaccgtgta
tacaagtcactgaaggtgtggtccatgcttgccgacttggaggaaagtctgggcaccttc
cagtcaaccaaggccgtgtacgaccggatcctggacctgcgcatagccacaccgcagatc
gtcatcaactacgccatgttcctggaggagcacaagtacttcgaggagagcttcaaggca
tatgagcgtggcatctcgctgttcaagtggcccaacgtgtcagacatctggagcacctac
ctgaccaaattcattgcccgctatgggggccgcaagctggagcgcgcacgggacctcttc
gagcaggcactagacggctgcccacccaaatatgccaagaccctgtacctgctttacgca
cagctggaggaggagtggggccttgcccgtcacgctatggctgtgtacgaccgcgctacc
cgggcagtggagccagcccagcagtatgatatgttcaacatctacatcaagcgggctgct
gagatctatggcgtcacccacactcggggcatctaccagaaggccattgaggtgctgtcc
gatgagcacgcccgtgagatgtgcctgcggtttgcagacatggagtgcaagcttggtgaa
atcgaccgagcccgagctatctacagcttctgctcccagatctgtgatcccaggaccact
ggggcattctggcaaacatggaaggactttgaggttcggcacggcaatgaggacaccatc
agggagatgctgaggatacgtcggagtgtgcaggccacatacaatactcaggtcaacttc
atggcttcacagatgctcaaggtgtcaggcagtgccacaggcaccgtgtctgacctggct
cctgggcagagcggcatggatgacatgaagttgctggagcagcgggcagagcagctcgca
gctgaggctgagcgggaccagcctccaagggcacagagcaagatcttctttgtgaggagc
gatgcatccagggaggagctggcagagctagctcagcaggccaaccccgaggagatccag
ctgggcgaggacgaggatgaggatgagatggacctggagcccaatgaagtccgactggag
cagcagagcgtgccagctgctgtgttcgggagcctaaaggaagactga
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integrated database retrieval system
